View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19194_low_13 (Length: 307)

Name: NF19194_low_13
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19194_low_13
NF19194_low_13
[»] chr2 (2 HSPs)
chr2 (212-291)||(11029919-11029998)
chr2 (139-211)||(45444145-45444217)
[»] chr7 (3 HSPs)
chr7 (106-211)||(41021053-41021158)
chr7 (30-77)||(41021187-41021234)
chr7 (221-281)||(43494976-43495036)
[»] chr4 (2 HSPs)
chr4 (106-211)||(49649593-49649698)
chr4 (31-65)||(49649751-49649785)
[»] chr3 (2 HSPs)
chr3 (30-77)||(41751967-41752014)
chr3 (106-210)||(41751833-41751937)
[»] scaffold0504 (1 HSPs)
scaffold0504 (139-211)||(6931-7003)
[»] scaffold0154 (1 HSPs)
scaffold0154 (140-212)||(11045-11117)
[»] chr6 (1 HSPs)
chr6 (214-268)||(2764942-2764996)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 11029998 - 11029919
Alignment:
Q  212 tcttttctctttaaattttgtggaaccatgttagtgtgcctaaacataatttatttgagtttgtgactatacaagtattt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11029998 tcttttctctttaaattttgtggaaccatgttagtgtgcctaaacataatttatttgagtttgtgactatacaagtattt 11029919  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 45444145 - 45444217
Alignment:
Q  139 ctaatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagagtttctc 211  Q
    |||||||||| |||||||||||||||||| |||||||| |||| |||||   |||||||||||||||||||||    
T  45444145 ctaatttttcttaatttcatgggtgtgtgtctaacatgtaatatttagtgccgtgtctaaccaagagtttctc 45444217  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 41021158 - 41021053
Alignment:
Q  106 cacatcaatcaatatcactttattccnnnnnnnctaatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagag 205  Q
    ||||||||||||||||| ||||||||       |||||||||| ||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||    
T  41021158 cacatcaatcaatatcattttattcctttttttctaatttttcttaatttcatgggtgtgtgcctaacatgtaatatttagtgttgtgtctaaccaagag 41021059  T
Q  206 tttctc 211  Q
    ||||||    
T  41021058 tttctc 41021053  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41021234 - 41021187
Alignment:
Q  30 gagatagtcttacatagacacaaatatttaggcacacacacattaatc 77  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  41021234 gagatagtcttatatagacacaaatatttaggcacacacacattaatc 41021187  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 43494976 - 43495036
Alignment:
Q  221 tttaaattttgtggaaccatgttagtgtgcctaaacataatttatttgagtttgtgactat 281  Q
    ||||||||||||| ||| | || |||||| | ||| |||||||||||| ||||||||||||    
T  43494976 tttaaattttgtgtaactaagtgagtgtgtccaaatataatttatttgggtttgtgactat 43495036  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 49649698 - 49649593
Alignment:
Q  106 cacatcaatcaatatcactttattccnnnnnnnctaatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagag 205  Q
    ||||||||||||||||||||||||||       |||||||||  ||||||||| ||||||||||||||||| |||| |||||  ||| | ||||||||||    
T  49649698 cacatcaatcaatatcactttattcctttttttctaattttttttaatttcataggtgtgtgcctaacatgtaatatttagtgttgtatttaaccaagag 49649599  T
Q  206 tttctc 211  Q
    ||||||    
T  49649598 tttctc 49649593  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 49649785 - 49649751
Alignment:
Q  31 agatagtcttacatagacacaaatatttaggcaca 65  Q
    |||||||||||||||||||||||||||||||||||    
T  49649785 agatagtcttacatagacacaaatatttaggcaca 49649751  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41752014 - 41751967
Alignment:
Q  30 gagatagtcttacatagacacaaatatttaggcacacacacattaatc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41752014 gagatagtcttacatagacacaaatatttaggcacacacacattaatc 41751967  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 41751937 - 41751833
Alignment:
Q  106 cacatcaatcaatatcactttattccnnnnnnnctaatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagag 205  Q
    ||||||||| ||||||| ||||||||       |||||||||| |||||| |||| ||||| ||||||||| |||| |||||  ||||||||||||||||    
T  41751937 cacatcaattaatatcattttattcctttttttctaatttttcttaattttatggatgtgtacctaacatgtaatatttagtgttgtgtctaaccaagag 41751838  T
Q  206 tttct 210  Q
    |||||    
T  41751837 tttct 41751833  T

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Target: scaffold0504 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 6931 - 7003
Alignment:
Q  139 ctaatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagagtttctc 211  Q
    |||||||||| |||||||||||||||||| |||||||| |||| |||||   |||||||||||||||||||||    
T  6931 ctaatttttcttaatttcatgggtgtgtgtctaacatgtaatatttagtgtcgtgtctaaccaagagtttctc 7003  T

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Target: scaffold0154 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 11045 - 11117
Alignment:
Q  140 taatttttcctaatttcatgggtgtgtgcctaacatgaaatagttagttatgtgtctaaccaagagtttctct 212  Q
    ||||||||| ||||||||||| ||||||||||||||| |||| |||||   ||||||||||||||||||||||    
T  11045 taatttttcttaatttcatggatgtgtgcctaacatgtaatatttagtgccgtgtctaaccaagagtttctct 11117  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 2764942 - 2764996
Alignment:
Q  214 ttttctctttaaattttgtggaaccatgttagtgtgcctaaacataatttatttg 268  Q
    |||||||||||||||||||| ||| |||| ||||| || ||||||| ||||||||    
T  2764942 ttttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttg 2764996  T

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