View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19194_low_4 (Length: 460)
Name: NF19194_low_4
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 50573132 - 50572703
Alignment:
| Q |
13 |
aatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacctttcttgctgccaatttagattgttgctca----tagctcaaatac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50573132 |
aatatagatacatagtaggaatgtgataaaccaaaaaaagaacaagaacacacctttcttgctgccaatttagattgttgctcacttttagctcaaatac |
50573033 |
T |
|
| Q |
109 |
aaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgccaaattatttggttttgcaaaaggaacaatgattagggatatggt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50573032 |
aaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgccaaattatttggttttgcaaaaggaacactgattagggatatggt |
50572933 |
T |
|
| Q |
209 |
tatatgttaaacaacacatacaatattggaatacaatgttnnnnnnncataaagcacttcaatgagcaagtgcaaccaaagagcataccatcatgccaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50572932 |
tatatgttaaacaacacatacaatattggaatacaatgttaaaaaaacataaagcacttcaatgagcaagtgcaaccaaagagcataccatcatgccaga |
50572833 |
T |
|
| Q |
309 |
agcagagataagtgcagttgtttttggttctctgatcttcataacgagaaaaggtatacgctgcaaagaattttgcattacgatcatcagtgcctctaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50572832 |
agcagagataagtgcagttgtttttggttctctgatcttcataacgagaaaaggtatacgctacaaagaattttgcattacgatcatcagtgcctctaaa |
50572733 |
T |
|
| Q |
409 |
acaatcatatttaccaattgaaaggaaaag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50572732 |
acaatcatatttaccaattgaaaggaaaag |
50572703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 259 - 437
Target Start/End: Complemental strand, 50567042 - 50566860
Alignment:
| Q |
259 |
aaagcacttcaatgagcaagtgcaaccaaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctgatcttcataacgagaa |
358 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||||| | ||||||| | ||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
50567042 |
aaagcacttcaatgagcaattgcaacaaaagagcacaccatcttcccagaagaatagataagtgcagttgcttttggttttctgatcttcataatgagaa |
50566943 |
T |
|
| Q |
359 |
aaggtatacgctgcaaagaattttgcattacgatc----atcagtgcctctaaaacaatcatatttaccaattgaaaggaaaa |
437 |
Q |
| |
|
|||| | | ||||||||||||||||||| || | | ||||||||| ||||| ||| |||||||| |||| ||||||||| |
|
|
| T |
50566942 |
aagggaaatgctgcaaagaattttgcatcacaaacatcgatcagtgccactaaagcaagcatatttatcaatgcaaaggaaaa |
50566860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 50567264 - 50567120
Alignment:
| Q |
52 |
gaacaagaacacacctttcttgctgccaatttagattgttgctcatag-ctcaaatacaaatctaggtaaattagaacagcataagaaacagaatt---- |
146 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||| ||||| | ||| | ||||||||||| ||||||| |||| ||||||||| |||| | |
|
|
| T |
50567264 |
gaacaagaacacaccttccttgcagccaatttagactgtttctcattgcctccagtacaaatctagttaaattacaacatcataagaaagagaaattaac |
50567165 |
T |
|
| Q |
147 |
ccttc-aaagtactatgccaaattatttggttttgcaaaaggaac |
190 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
50567164 |
ccttcaaaagtacaatgtgaaattatttggttttgcaaaacgaac |
50567120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 9987095 - 9987157
Alignment:
| Q |
290 |
agcataccatcatgccagaagcagagataagtgcagttgtttttggttctctgatcttcataa |
352 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
9987095 |
agcataccattttgccagaagcaaagatgagtgcagttgtttttggttctctgatcctcataa |
9987157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 9986620 - 9986664
Alignment:
| Q |
52 |
gaacaagaacacacctttcttgctgccaatttagattgttgctca |
96 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9986620 |
gaacaagaacacaccttccttgctgccaatttagactgttgctca |
9986664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 27013277 - 27013211
Alignment:
| Q |
286 |
aaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctgatcttcataa |
352 |
Q |
| |
|
||||| ||||||||| ||||||| ||| | |||||||| |||||||||||||| | |||| |||||| |
|
|
| T |
27013277 |
aaagaacataccatcttgccagatgcaaaaataagtgctgttgtttttggttcccggatcctcataa |
27013211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University