View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19194_low_6 (Length: 364)
Name: NF19194_low_6
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 19915171 - 19914811
Alignment:
| Q |
1 |
ctctaaataatcaagaataatgtatccattgtgattcatgagaaccaagagagatgatggtgaagcatgtaagagaggacgattattttcattgtcgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19915171 |
ctctaaataatcaagaataatgtatccattgtgattcatgagaaccaagagagatgatggtgaagcatgtaagagaggacgattatcttcattgtcgtct |
19915072 |
T |
|
| Q |
101 |
atattttcatatgcatattaactatataatgagacaacgattaaaaagtcaaaaacgatataagacaaataccttttattcaacttaataaaattgtctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19915071 |
atattttcatatgcatattaactatataatgagacaacgattaaaaagtcaaaaacgatataagacaaataccttttattcaacttaataaaattgtctg |
19914972 |
T |
|
| Q |
201 |
atatatcacgatcgtttgtgttcagaaatgattcctactaaaatgcttgcaactaaatgttatagtgagttgaatgtgagttattgaactagtatatcct |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19914971 |
atatatcacaatcgtttgtgttcagaaatgattcctactaaaatgcttgcaactaaatgttatagtgagttgaatgtgagttattgaactagtatatcct |
19914872 |
T |
|
| Q |
301 |
tctttgacctaacaacattgtcttccggttgtaacaacatagcttattcttgctaaatttt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
19914871 |
tctttgacctaacaacattgtcttccggttgcaaaaacatagcttattcttgctaaatttt |
19914811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University