View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19195_high_13 (Length: 281)

Name: NF19195_high_13
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19195_high_13
NF19195_high_13
[»] chr4 (24 HSPs)
chr4 (15-263)||(35969257-35969505)
chr4 (15-246)||(36635835-36636069)
chr4 (16-243)||(36627112-36627342)
chr4 (15-246)||(28125766-28126001)
chr4 (15-244)||(18360973-18361207)
chr4 (15-244)||(36601722-36601956)
chr4 (161-263)||(29677424-29677526)
chr4 (46-243)||(55965765-55965965)
chr4 (157-243)||(36612402-36612488)
chr4 (150-226)||(43941954-43942030)
chr4 (161-243)||(36664919-36665001)
chr4 (166-243)||(36616590-36616667)
chr4 (161-243)||(18084012-18084094)
chr4 (165-243)||(36630273-36630351)
chr4 (15-117)||(36630399-36630501)
chr4 (178-243)||(18365178-18365243)
chr4 (178-243)||(36597682-36597747)
chr4 (16-121)||(36642496-36642601)
chr4 (178-243)||(36910512-36910577)
chr4 (178-243)||(36642658-36642723)
chr4 (165-254)||(52187783-52187872)
chr4 (149-241)||(36655955-36656047)
chr4 (40-120)||(36664792-36664872)
chr4 (15-85)||(18365336-18365406)
[»] chr6 (3 HSPs)
chr6 (158-243)||(33839341-33839426)
chr6 (16-243)||(33843103-33843333)
chr6 (16-119)||(33839187-33839290)
[»] chr5 (2 HSPs)
chr5 (157-243)||(19657373-19657459)
chr5 (157-243)||(19674217-19674303)
[»] chr1 (3 HSPs)
chr1 (15-119)||(42601786-42601890)
chr1 (179-243)||(42601950-42602014)
chr1 (178-243)||(28927459-28927524)
[»] chr8 (1 HSPs)
chr8 (15-243)||(35336719-35336947)
[»] chr7 (2 HSPs)
chr7 (179-243)||(30597242-30597306)
chr7 (178-238)||(6849712-6849772)
[»] chr3 (3 HSPs)
chr3 (178-243)||(7119802-7119867)
chr3 (178-243)||(13460643-13460708)
chr3 (178-238)||(7127018-7127078)
[»] chr2 (3 HSPs)
chr2 (179-237)||(43429258-43429316)
chr2 (178-243)||(43863138-43863203)
chr2 (177-233)||(43866610-43866666)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 35969505 - 35969257
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35969505 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttactcgacttggcagcaactttctttaac 35969406  T
Q  115 atggcattcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctcta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969405 atggcattcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctcta 35969306  T
Q  215 ataaatcaggaactaaggagagaatctaaacagtcaagaacgagagtga 263  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35969305 atatatcaggaactaaggagagaatctaaacagtcaagaacgagagtga 35969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 36635835 - 36636069
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| || |||  |||||||| ||||||||||| ||||||||||||| |||||||||||    
T  36635835 aactattccatcaggtatgggaggtggttccaaacgtgctttaaaagcctttcttaacttggcagcttctttacgtgacttggcagcagctttctttaac 36635934  T
Q  115 atgg---cattcactacgcggggtaatcccagttgagtttgaagagg-ttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacc 210  Q
    ||||   | ||||| | |  ||||||| ||| |||| ||   | ||| ||||| |||||||||||| ||||||||||||||||||||| | |||| ||||    
T  36635935 atggcttctttcaccaggttgggtaatgccatttga-ttactacaggtttccagttttatttccatagacttcaagttacacaaagaaggcagcttaacc 36636033  T
Q  211 tctaataaatcaggaactaaggagagaatctaaaca 246  Q
    |||| ||||||||||||||| |||||||||||||||    
T  36636034 tctagtaaatcaggaactaatgagagaatctaaaca 36636069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 36627112 - 36627342
Alignment:
Q  16 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 115  Q
    ||||||||||| ||||||| ||| |||| | |||||||||||||||||||| ||| ||| | ||||||||||| |||  |||||  | || |||||||||    
T  36627112 actattccatcaggtatggaaggtggtttccaacctgctttaaatgcttttcgtacctttgcagcttctttacgtgatgtggcaatagctctctttaaca 36627211  T
Q  116 tggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctc 212  Q
    ||||||   ||| || |  ||||||||| || |||  ||  |  |||||||||||||||||||| |||||||||||||  |||||| |||||||||||||    
T  36627212 tggcatctttcaatatgaagggtaatcctagctgaacttcgattggttccaattttatttccattgacttcaagttaccgaaagaagggagctcaacctc 36627311  T
Q  213 taataaatcaggaactaaggagagaatctaa 243  Q
     ||||||||||||||||||||||||||||||    
T  36627312 caataaatcaggaactaaggagagaatctaa 36627342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 28126001 - 28125766
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgactt-ggcagcaactttctttaa 113  Q
    ||||||||| || ||||||||||| |||||  ||||||||| |||| || ||||||||  |  |||||||| || |||||| ||||||| ||||||||||    
T  28126001 aactattccgtccggtatgggaggtggttcagaacctgcttcaaattctgtttgtaacccgtcagcttcttcacgtgactttggcagcagctttctttaa 28125902  T
Q  114 catggcatt---cactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacc 210  Q
    ||||  |||   | |||    |||||||  |  ||| | |||| | ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  28125901 catgcgatttttcgctatttagggtaataacccttgtgcttgaggtggtgccaattttatttccatcgacttcaagtaacacaaagaacggagcttaacc 28125802  T
Q  211 tctaataaatcaggaactaaggagagaatctaaaca 246  Q
    |||| |||||||||||||||||||||||||||||||    
T  28125801 tctagtaaatcaggaactaaggagagaatctaaaca 28125766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 18361207 - 18360973
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||||||  |||| ||||| ||||| |||||| |||  |||||| | ||||||||||| |||||||||||||||||||||||||    
T  18361207 aactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 18361108  T
Q  115 atggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct---caa 208  Q
    |||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||    ||    
T  18361107 atggcatcgctcactatgttgggtaatccca-ttggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataa 18361009  T
Q  209 cctctaataaatcaggaactaaggagagaatctaaa 244  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  18361008 cctctagtaaataaggaactaaggagagtatctaaa 18360973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 36601722 - 36601956
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||||||  |||| ||||| ||||| |||||| |||  |||||| | ||||||||||| |||||||||||||||||||||||||    
T  36601722 aactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 36601821  T
Q  115 atggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct---caa 208  Q
    |||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||    ||    
T  36601822 atggcatcgctcactatgttgggtaatccca-ttggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataa 36601920  T
Q  209 cctctaataaatcaggaactaaggagagaatctaaa 244  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  36601921 cctctagtaaataaggaactaaggagagtatctaaa 36601956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 29677526 - 29677424
Alignment:
Q  161 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaaacagtcaagaacgagag 260  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| |||| | || || |||||    
T  29677526 ccaatttaatttccatcgacttcaagttacacaaagagtggagcttaacctctggtaaatcaggaactaaggagagaatctgaacaatgaataatgagag 29677427  T
Q  261 tga 263  Q
    |||    
T  29677426 tga 29677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 55965765 - 55965965
Alignment:
Q  46 aaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaacatggcat---tcactacgcggggtaatccca 142  Q
    ||||| |||| |||||||||||||||||||||||||||||  |  |||| ||||||| |||||||||||||||| |   ||| || | |||||||| |||    
T  55965765 aaacccgcttcaaatgctttttgtaacttggtagcttcttcgcaagactcggcagcatctttctttaacatggcttctttcattaagtggggtaattcca 55965864  T
Q  143 gttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatcta 242  Q
      | |  || | | |||||||||| ||||||| ||||||||||||||||||||||| |||| |  | ||| |||||||  ||||||||||||||||||||    
T  55965865 tatcatctttaggtggttccaattctatttccgtcgacttcaagttacacaaagaagggagtttgagctccaataaattgggaactaaggagagaatcta 55965964  T
Q  243 a 243  Q
    |    
T  55965965 a 55965965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 36612402 - 36612488
Alignment:
Q  157 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||||||||||||| || ||||| ||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||    
T  36612402 ggttccaattttatttctatagactttaagttgcacaaagaagggagcttaacctctaataaatcaggaattaaggagagaatctaa 36612488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 43942030 - 43941954
Alignment:
Q  150 ttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaa 226  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| ||||||||| ||||||    
T  43942030 ttgaagtggttccaattttatttccatagactttaagttacacaaagaagggagcttaacttctaataaaccaggaa 43941954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 36664919 - 36665001
Alignment:
Q  161 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||| || |||||  |||||||||||||| || ||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  36664919 ccaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggagagaatctaa 36665001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 36616590 - 36616667
Alignment:
Q  166 tttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||| | ||||||||||||| |||||| |||||| |||||| |||| ||||||||||||||| |||||||||    
T  36616590 tttatttccaccaacttcaagttacataaagaagggagcttaacctccaatagatcaggaactaaggacagaatctaa 36616667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 18084094 - 18084012
Alignment:
Q  161 ccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||| || |||||  |||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||||||||    
T  18084094 ccaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggacagaatctaa 18084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 36630351 - 36630273
Alignment:
Q  165 ttttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||| |||||  ||| |||||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  36630351 ttttacttccaatgacctcaagttacaaaaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaa 36630273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 36630501 - 36630399
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||| |||   ||| |||||||||||||| || |||  ||||||    ||||||||||||||||| ||||||||||||||||||    
T  36630501 aactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaac 36630402  T
Q  115 atg 117  Q
    |||    
T  36630401 atg 36630399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 18365243 - 18365178
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||||||||||  || || |||||| |||||||||||||| |||||||||||||||    
T  18365243 gacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 18365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 36597682 - 36597747
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||||||||||  || || |||||| |||||||||||||| |||||||||||||||    
T  36597682 gacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 36597747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 36642496 - 36642601
Alignment:
Q  16 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 115  Q
    ||||||||||  ||||||| ||| ||||||||||  ||||||||||  |||  |||||| | | |||||||||||||| |||||||| ||||||||||||    
T  36642496 actattccattaggtatggcaggtggttccaaacgagctttaaatgtctttcttaacttagcaacttctttacttgacatggcagcatctttctttaaca 36642595  T
Q  116 tggcat 121  Q
     |||||    
T  36642596 aggcat 36642601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 36910577 - 36910512
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||| ||||||||||  | |||||| |||||||||||||||||||| |||||||||    
T  36910577 gacttcaagttacataaagaatggaatttaacctccaataaatcaggaactaaggacagaatctaa 36910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 36642658 - 36642723
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||| |||||||| |||| |||||   ||||||||||||||| |||||||||||||    
T  36642658 gacttcaagttacataaagaatgtagcttaaccttcgataaatcaggaactatggagagaatctaa 36642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 52187872 - 52187783
Alignment:
Q  165 ttttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaaacagtcaagaa 254  Q
    |||||||| ||  ||||||||| ||||||| ||||||| ||||||||  ||||||||||||||||| || |||| |||| || |||||||    
T  52187872 ttttattttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaatcaagaa 52187783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 36655955 - 36656047
Alignment:
Q  149 tttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatct 241  Q
    ||||||| | ||||| || ||||||||  ||||||||||||||||||||| | | || || ||  ||||||| ||||||||||||||||||||    
T  36655955 tttgaagtgattccagttctatttccagtgacttcaagttacacaaagaaggtatcttaaacttcaataaattaggaactaaggagagaatct 36656047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 36664792 - 36664872
Alignment:
Q  40 ggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaacatggca 120  Q
    |||||||||| |||||| ||||| |||  |||||| | | |||||||||  |||||||||||| |||||||||||||||||    
T  36664792 ggttccaaacgtgctttgaatgcctttcttaacttagcaacttctttacgagacttggcagcagctttctttaacatggca 36664872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 18365406 - 18365336
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctt 85  Q
    |||||||||||| ||||||||||| |||| |||||| || |||||||| || | |||||| | ||||||||    
T  18365406 aactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaacttagcagcttctt 18365336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 33839341 - 33839426
Alignment:
Q  158 gttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||    
T  33839341 gttccaattttatttccaccgacttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaa 33839426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33843103 - 33843333
Alignment:
Q  16 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 115  Q
    ||||||||||| |||| || ||| |||  |||||| ||||||||||||||| ||| ||||| ||||||||| | ||||||||||||| ||||||||||||    
T  33843103 actattccatcaggtacggaaggtggtcgcaaacccgctttaaatgcttttcgtagcttggaagcttctttgcgtgacttggcagcagctttctttaaca 33843202  T
Q  116 tggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctc 212  Q
    |||| |   |||||| |     ||||      |||  || ||| || ||||||||||||||||||||||||||||||| ||||||| | |||| ||||||    
T  33843203 tggcttctttcactaagtacaataattttgtgtgatcttcaagtggctccaattttatttccatcgacttcaagttactcaaagaaggaagcttaacctc 33843302  T
Q  213 taataaatcaggaactaaggagagaatctaa 243  Q
     |||||||  |||||||||||||||||||||    
T  33843303 caataaattgggaactaaggagagaatctaa 33843333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 33839187 - 33839290
Alignment:
Q  16 actattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaaca 115  Q
    ||||||||||| ||||||| ||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||| | |||||| |||||| ||||||||||||    
T  33839187 actattccatcaggtatggaaggtggttctaaacccgctttaaatgcttttcgtaacttggaagcttctttgcgtgactttgcagcagctttctttaaca 33839286  T
Q  116 tggc 119  Q
    ||||    
T  33839287 tggc 33839290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 19657373 - 19657459
Alignment:
Q  157 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  19657373 ggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaa 19657459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 19674217 - 19674303
Alignment:
Q  157 ggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  19674217 ggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaa 19674303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 42601786 - 42601890
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||||||| ||||  ||||| ||||||||| | |||  |||||| | ||||||||||| ||||||||||||| |||||||||||    
T  42601786 aactattccatcgggtatgggaggtggttttaaacccgctttaaattcctttcttaacttagcagcttctttacgtgacttggcagcagctttctttaac 42601885  T
Q  115 atggc 119  Q
    |||||    
T  42601886 atggc 42601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 42601950 - 42602014
Alignment:
Q  179 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||||    
T  42601950 acttcaagttacacaacgaagtgagcttaacctccaataaatcaggaactaaggagagaatctaa 42602014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 28927459 - 28927524
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||| |||||||| ||||||| ||||||||  ||||||||||||| ||||| ||||| ||||    
T  28927459 gacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggtgagaacctaa 28927524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 35336947 - 35336719
Alignment:
Q  15 aactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttacttgacttggcagcaactttctttaac 114  Q
    |||||||||||| ||||||||||| |||  |||||||||||||||||  |||  |||||| | |||||| ||||  |||||||||||  |||||||||||    
T  35336947 aactattccatcaggtatgggaggtggtctcaaacctgctttaaatgtctttcttaactttgcagcttcattacaggacttggcagccgctttctttaac 35336848  T
Q  115 atggcatt---cactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagctcaacct 211  Q
    ||||||||   || ||  ||| |||||    || ||   | ||  ||   || || ||||||||  ||||||||||||||||||||| |||||| |||||    
T  35336847 atggcattttccattatacggagtaat---ggtcgataatcaaatggcatcatttctatttccaatgacttcaagttacacaaagaagggagcttaacct 35336751  T
Q  212 ctaataaatcaggaactaaggagagaatctaa 243  Q
    | ||||||||||||||||||||||||| ||||    
T  35336750 ccaataaatcaggaactaaggagagaacctaa 35336719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 30597242 - 30597306
Alignment:
Q  179 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||||||||| ||||||| ||||    
T  30597242 acttcaagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaa 30597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 6849772 - 6849712
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaa 238  Q
    ||||||||||  ||||| |||||||  |||||||  |||||||||||||||||||||||||    
T  6849772 gacttcaagtcccacaaggaatggaattcaaccttcaataaatcaggaactaaggagagaa 6849712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 7119867 - 7119802
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||||||||||||| ||| | |||| |||||  ||||||||||||||||||||||||| ||||    
T  7119867 gacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaa 7119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 13460708 - 13460643
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||||||||| |||||||  ||||| ||||   ||||||| ||||||||||||||||| ||||    
T  13460708 gacttcaagttacgcaaagaagagagcttaaccctcaataaattaggaactaaggagagaacctaa 13460643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 7127078 - 7127018
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaa 238  Q
    ||||||||||||| ||| |||||||| | |||||  || ||| ||||||||||||||||||    
T  7127078 gacttcaagttacgcaaggaatggagtttaaccttcaacaaaccaggaactaaggagagaa 7127018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 43429258 - 43429316
Alignment:
Q  179 acttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagaga 237  Q
    ||||||||||||||||||||  || || ||||||  |||||||||||| ||||||||||    
T  43429258 acttcaagttacacaaagaagagaacttaacctccgataaatcaggaattaaggagaga 43429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 43863138 - 43863203
Alignment:
Q  178 gacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaaggagagaatctaa 243  Q
    ||||||||||||||||| ||| ||||||| ||||  |||||| || |||||||||| |||| ||||    
T  43863138 gacttcaagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaa 43863203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 43866610 - 43866666
Alignment:
Q  177 cgacttcaagttacacaaagaatggagctcaacctctaataaatcaggaactaagga 233  Q
    ||||||||||||| |||| ||| ||| ||||||||  ||||||||| ||||||||||    
T  43866610 cgacttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaagga 43866666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University