View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_high_15 (Length: 266)
Name: NF19195_high_15
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 55245045 - 55244792
Alignment:
| Q |
14 |
atctcaaccttcacctttttctcttactt-gtttacatcaccttcagctatatatcacatcaatcatcttgtgctttggcttttcgactccaattttatt |
112 |
Q |
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| T |
55245045 |
atctcaaccttcacctttttctcttactttgtttacatcaccttcagctatatatgacatcaatcatcttgtgctttggcttttcgactccaattttatg |
55244946 |
T |
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| Q |
113 |
attaatttctcagttgcaggcaatgtttgttgtactatttattatggtggccaagtacaagtacaaactaactagctaactagctagcttgtttgtatat |
212 |
Q |
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| T |
55244945 |
tttaatttctcagttgcaggcaatgtttgttgtactatttattatgttggccaagtacaagtacaaactaactagctaactagctagcttgtttgtatat |
55244846 |
T |
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| Q |
213 |
catgtgtatgttattaaaatataaaataattcgggtcttttcaccaagtagatt |
266 |
Q |
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| T |
55244845 |
catgtgtatgttattaaaatataaaataattcgggtcttttcaccaagtagatt |
55244792 |
T |
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