View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_high_2 (Length: 701)
Name: NF19195_high_2
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 348 - 683
Target Start/End: Complemental strand, 3929520 - 3929187
Alignment:
| Q |
348 |
aatcatttatcaggtagtcaaatttactacactaaatcaatttagcaataaaaacctggtatgcaatgattaattaataggcaacactgaaatatacagt |
447 |
Q |
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| T |
3929520 |
aatcatttatcaggtagtcaaatttactacactaaatcaatttagcaataaaaacctggtatgcattgattagttaataggcaacactgaaatatacact |
3929421 |
T |
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| Q |
448 |
aattgagctttggcaatggtgtgataagcctctcccaaggctatcaaatgtactgatacnnnnnnngaaagaaagagtatctaatgtattttgattctca |
547 |
Q |
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| T |
3929420 |
aattgagctttggcaatgttgtgataagcctctcccaaggctatcaaatgtactgatacaaaaaaagaaaga--gagtatctaatgtattttgattctca |
3929323 |
T |
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| Q |
548 |
atagcttttgtatagtgtagaggcaattctcaagacataattgttgagtaaatcatcaagcttgtctttgactttgtagggcgctctcaaatatgtcaaa |
647 |
Q |
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| T |
3929322 |
atagcttttgtatagtgtagaggcaattctcaagacataattgttgagtaaatcaccaagcttgtctttgactttgtagggcgctctcaaatatgtcaaa |
3929223 |
T |
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| Q |
648 |
ttagtatttgatcctgtcaaattttacgtccatcct |
683 |
Q |
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| T |
3929222 |
ttagtatttgatcctgtcaaattttacttccatcct |
3929187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 3929937 - 3929628
Alignment:
| Q |
1 |
gcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttannnnnnngttaggatttgaatctaatttc |
100 |
Q |
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| T |
3929937 |
gcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttattttgttgttaggatttgaatctaatttc |
3929838 |
T |
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| Q |
101 |
tcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaattttcaatttt |
200 |
Q |
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| T |
3929837 |
tcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaattttcaatttt |
3929738 |
T |
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| Q |
201 |
gtttaacttgatttgatgaaaatttgatcatagtaactaatttgttgctttttagctttgaagttgggaaattttgcttcaattttaatatcgaagttgt |
300 |
Q |
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| T |
3929737 |
gtttaacttgatttgatgaaaattcgatcatagtaactaatttgttgctttttagctttgacgttgggaaattttgcttcaattttaatattgaagttgt |
3929638 |
T |
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| Q |
301 |
ctatggatat |
310 |
Q |
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| T |
3929637 |
ctatggatat |
3929628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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