View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19195_high_5 (Length: 429)

Name: NF19195_high_5
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19195_high_5
NF19195_high_5
[»] chr4 (5 HSPs)
chr4 (129-413)||(30716276-30716560)
chr4 (49-133)||(30716580-30716664)
chr4 (49-118)||(30895624-30895693)
chr4 (16-49)||(4652785-4652818)
chr4 (16-48)||(41041641-41041673)
[»] chr6 (2 HSPs)
chr6 (129-413)||(28118837-28119119)
chr6 (49-133)||(28119140-28119224)
[»] chr2 (2 HSPs)
chr2 (49-118)||(971244-971313)
chr2 (16-48)||(3907086-3907118)
[»] chr1 (1 HSPs)
chr1 (16-48)||(44512569-44512601)
[»] chr5 (2 HSPs)
chr5 (16-49)||(27020257-27020290)
chr5 (12-40)||(29388969-29388997)
[»] chr8 (1 HSPs)
chr8 (16-48)||(15883604-15883636)
[»] chr3 (1 HSPs)
chr3 (16-48)||(30043672-30043704)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 129 - 413
Target Start/End: Complemental strand, 30716560 - 30716276
Alignment:
Q  129 gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtccatatacaaaacaacttccctactaattaaataaagctctatgtg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30716560 gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtctatatacaaaacaacttccctactaattaaataaagctctatgtg 30716461  T
Q  229 taaaacacaattctgaatctatcagtcataatagaaataaaaataaactagactcaagactacttttccttgaaagagttttcttctaacacagatgtat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||||| ||| |    
T  30716460 taaaacacaattctgaatctatcagtcataatagaaataaaaataaactagactcaaggctgctattccttgaaagagttttcttccaacacagctgttt 30716361  T
Q  329 tgtgcattgacactggtctattttcatnnnnnnnnngccacagtttcaccgcccttttcatcttcattcatttcaatcttcccta 413  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30716360 tgtgcattgacactggtctattttcatactccccccgccacagtttcaccgcccttttcaccttcgttcatttcaatcttcccta 30716276  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 30716664 - 30716580
Alignment:
Q  49 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30716664 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa 30716580  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 30895624 - 30895693
Alignment:
Q  49 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa 118  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||  |||||||||||| ||||    
T  30895624 ttattgtacaataacaaatgctgttgaaataccatcttctaaccatgaatgtccgtttatttatttacaa 30895693  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 4652818 - 4652785
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacct 49  Q
    ||||||||||||||| ||||||||||||||||||    
T  4652818 ctctaaacaagagagggtaatgtaggcctcacct 4652785  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 41041641 - 41041673
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacc 48  Q
    ||||||||||||||| |||||||||||||||||    
T  41041641 ctctaaacaagagagggtaatgtaggcctcacc 41041673  T

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Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 129 - 413
Target Start/End: Complemental strand, 28119119 - 28118837
Alignment:
Q  129 gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtccatatacaaaacaacttccctactaattaaataaagctctatgtg 228  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||    
T  28119119 gctagataatattttcatgcatggtaagttattcaattctatgccaaaatgagtctatatacaaaacaacttccctactaattaaataaagctct--gtg 28119022  T
Q  229 taaaacacaattctgaatctatcagtcataatagaaataaaaataaactagactcaagactacttttccttgaaagagttttcttctaacacagatgtat 328  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |||| |||||| |    
T  28119021 taaaacacaattctgaacctatcagtcataatagaaataaaaataaactagactcaaggctgctattccttgaaagagttttcttccaacagagatgttt 28118922  T
Q  329 tgtgcattgacactggtctattttcatnnnnnnnnngccacagtttcaccgcccttttcatcttcattcatttcaatcttcccta 413  Q
    |||||||| ||||| ||||||||||||         |||||||||||||||||||||||| || |||||||||||||||||||||    
T  28118921 tgtgcattaacactagtctattttcatactccccccgccacagtttcaccgcccttttcacctccattcatttcaatcttcccta 28118837  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 28119224 - 28119140
Alignment:
Q  49 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28119224 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcaagtttatttattcacaaaccaatcactgctaa 28119140  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 971244 - 971313
Alignment:
Q  49 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971244 ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa 971313  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 3907086 - 3907118
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacc 48  Q
    ||||||||||||||| |||||||||||||||||    
T  3907086 ctctaaacaagagagtgtaatgtaggcctcacc 3907118  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 44512569 - 44512601
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacc 48  Q
    |||||||||||||||||||||||||||||||||    
T  44512569 ctctaaacaagagagagtaatgtaggcctcacc 44512601  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 27020257 - 27020290
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacct 49  Q
    ||||||||||||||| ||||||||||||||||||    
T  27020257 ctctaaacaagagagggtaatgtaggcctcacct 27020290  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 29388997 - 29388969
Alignment:
Q  12 tattctctaaacaagagagagtaatgtag 40  Q
    |||||||||||||||||||||||||||||    
T  29388997 tattctctaaacaagagagagtaatgtag 29388969  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 15883604 - 15883636
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacc 48  Q
    |||||||||||||||||||| ||||||||||||    
T  15883604 ctctaaacaagagagagtaacgtaggcctcacc 15883636  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 30043672 - 30043704
Alignment:
Q  16 ctctaaacaagagagagtaatgtaggcctcacc 48  Q
    ||||||||||||||| |||||||||||||||||    
T  30043672 ctctaaacaagagagggtaatgtaggcctcacc 30043704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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