View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_high_8 (Length: 346)
Name: NF19195_high_8
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 43417131 - 43416808
Alignment:
| Q |
1 |
ttatattgttttttagatgaacttacaaataatatgtaattgagtcgaaaacttgttcttaaagtaaaaaacgcataannnnnnnngagggaaggagttg |
100 |
Q |
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| T |
43417131 |
ttatattgttttttagatgaacttacaaataatatgtaattgagtcgaaaacttgttctaaaagtaaaaaacgcataattttttt-gagggaaggagttg |
43417033 |
T |
|
| Q |
101 |
aaaatgggaggagcagatagaaaggagtgaaacttgactatgaatcaaa-catgcacgatttccttcctagaataggtatagataattaatatataatag |
199 |
Q |
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| T |
43417032 |
aaaatgggaggagcagatagaaaggagtgaaacttgactatgaatcaaaacatgcacgatttcct----agaataggtatagataattaata----atag |
43416941 |
T |
|
| Q |
200 |
aatgtcaagttttactcatttctctccacttaattattcagtcttaatatatctctacataatataataacacacacctccaagatagaaatatatgttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43416940 |
aatgtcaagttttactcatttctctccacttaattattcagtcttaatatatctctacataatataataacacacacctcgaagatagaaatatatgttg |
43416841 |
T |
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| Q |
300 |
gtgtgtagtagtagctagctaccagaagaaatt |
332 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43416840 |
gtgtgtagtagtagctagctaccagaagaaatt |
43416808 |
T |
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