View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_low_17 (Length: 250)
Name: NF19195_low_17
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_low_17 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 15884903 - 15885145
Alignment:
| Q |
8 |
cgaataatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
107 |
Q |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
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| Q |
108 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
207 |
Q |
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| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga |
15885102 |
T |
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| Q |
208 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggt |
250 |
Q |
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| T |
15885103 |
agagttcgcgtctttggggaagggagaatcaattgctggaggt |
15885145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 12611145 - 12610940
Alignment:
| Q |
8 |
cgaataatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
107 |
Q |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
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| Q |
108 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
207 |
Q |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
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| Q |
208 |
agagtt |
213 |
Q |
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| T |
12610945 |
agagtt |
12610940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 12638145 - 12637903
Alignment:
| Q |
8 |
cgaataatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
107 |
Q |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
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| Q |
108 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
207 |
Q |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
12637946 |
T |
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| Q |
208 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggt |
250 |
Q |
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| T |
12637945 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggt |
12637903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 63278 - 63068
Alignment:
| Q |
8 |
cgaataatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
107 |
Q |
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| T |
63278 |
cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt |
63179 |
T |
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| Q |
108 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
207 |
Q |
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| T |
63178 |
tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga |
63079 |
T |
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| Q |
208 |
agagttcgcgt |
218 |
Q |
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| T |
63078 |
acagtttgcgt |
63068 |
T |
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