View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19195_low_19 (Length: 247)

Name: NF19195_low_19
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19195_low_19
NF19195_low_19
[»] chr6 (4 HSPs)
chr6 (1-232)||(26593831-26594062)
chr6 (1-232)||(16169467-16169698)
chr6 (1-232)||(25821772-25822003)
chr6 (1-230)||(14639419-14639648)
[»] scaffold0012 (1 HSPs)
scaffold0012 (4-239)||(50624-50859)
[»] chr3 (2 HSPs)
chr3 (1-137)||(1052971-1053106)
chr3 (141-232)||(1064851-1064942)
[»] chr1 (1 HSPs)
chr1 (4-239)||(12631456-12631691)
[»] chr8 (1 HSPs)
chr8 (19-232)||(26655950-26656163)
[»] scaffold0437 (1 HSPs)
scaffold0437 (1-228)||(6099-6324)
[»] chr2 (1 HSPs)
chr2 (172-232)||(27515896-27515956)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26593831 - 26594062
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||||||||| ||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||| |||||    
T  26593831 tagaattcaaaatacccctttcccaatggcgtcattttccatggcccaacgttcgtccaaagttgctgaagctttgtgtgaacctcccgtgatccatagg 26593930  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgt 200  Q
    |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| ||| ||||||||||||||||||| |||||||||| ||    
T  26593931 gtttgtcgcccttacttaagatgagtctgccccgtaagtttctctttcaagcatcgattccttgtgcgtaggtctcatcagatataaggatgcatagcgt 26594030  T
Q  201 ttcaccacggataaccggagttggtaacggtg 232  Q
    |||||||| |||||||| ||||||||||||||    
T  26594031 ttcaccacagataaccgaagttggtaacggtg 26594062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16169698 - 16169467
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||| ||||| ||||||||  |  ||| |||||    
T  16169698 tagaattcaaaatacccctttcctagtggcgtcatcttccatgggccaacgttcttccaaagttgctgaagctttgtctgaacctcacggaatccatagg 16169599  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgt 200  Q
    | ||||| ||||| ||||| || || | |||||| |||| | | || | | |||| |||||| ||   || ||||||||||| ||||| ||||| || ||    
T  16169598 gcttgtctcccttgcttaaaattagacggccccgtaaatttattttacaagcatctattccttgttcataagtctcatcagaaataggaatgcagagagt 16169499  T
Q  201 ttcaccacggataaccggagttggtaacggtg 232  Q
    ||| ||||||||||||||||||||||||||||    
T  16169498 ttccccacggataaccggagttggtaacggtg 16169467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25822003 - 25821772
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| ||| |||||||||| | ||| ||||| ||||||||  |  ||| |||||    
T  25822003 tagaattcaaaatacccatttcctagtggcgtcatcttccatgggccaacgttcttccaaagttgctaaagctttgtctgaacctcacggaatccatagg 25821904  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgt 200  Q
    | ||||| ||||| ||||| || || | | |||| |||| ||| || | | |||| |||||| ||   || ||||||||||| ||||| ||||| || ||    
T  25821903 gcttgtctcccttgcttaaaattagacggtcccgtaaatttcttttacaagcatctattccttgttcataagtctcatcagaaataggaatgcagagagt 25821804  T
Q  201 ttcaccacggataaccggagttggtaacggtg 232  Q
    ||| ||||||||||||||||||||||||||||    
T  25821803 ttccccacggataaccggagttggtaacggtg 25821772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 14639648 - 14639419
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||| ||||| || || ||||||||||| | ||| || |||||| || |||||||||| ||||| |||||  |||| ||  |  ||| |||||    
T  14639648 tagaattcaaagtacccattgcctagtggcgtcatctaccatgggccaacactcttccaaagttgctgaagctttgtccgaacttcacggaatccatagg 14639549  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgt 200  Q
    | ||||| ||||| ||||| || ||||  ||||| |||| ||| || | | |||  |||||| ||   ||| |||||||||| ||||| ||||| || ||    
T  14639548 gcttgtctcccttgcttaaaattagtcgaccccgtaaatttcttttacaagcatatattccttgttcatagctctcatcagaaataggaatgcagagagt 14639449  T
Q  201 ttcaccacggataaccggagttggtaacgg 230  Q
    |||||||||||||  ||| |||||||||||    
T  14639448 ttcaccacggatattcggtgttggtaacgg 14639419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 50859 - 50624
Alignment:
Q  4 aattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagggtt 103  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||| |||||||||| ||||| ||||| ||||||||| |  ||| |||||| |    
T  50859 aattcaaaatacccctttcctagtggcgtcatcttccatggcccaacgttcttccaaagttgctgaagctttgtctgaacctcccggaatccatagggct 50760  T
Q  104 tgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgtttc 203  Q
    | |||||||| ||||| ||||||| |||||| |||| |||||||| | ||||||||||| ||  ||||||||||||||| |||||||| ||||| |||||    
T  50759 tatcgcccttgcttaatatgagtcggccccgtaaatttctcttgcaagcatcaattccttgttcgtaggtctcatcagaaatagggatacatagcgtttc 50660  T
Q  204 accacggataaccggagttggtaacggtgatgatgt 239  Q
    ||||||||||||||||| |||||||||||| |||||    
T  50659 accacggataaccggagatggtaacggtgaagatgt 50624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1052971 - 1053106
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  1052971 tagaattcaaaatacccttttcccagtggcgtcatcttccatggcccaacattcgtccaaagttgttgaagctttg-ttgaacctcccgtgatcaatagg 1053069  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaa 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  1053070 gtttgtcgcccttacttaagatgagtctgccccgaaa 1053106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 1064851 - 1064942
Alignment:
Q  141 tctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgtttcaccacggataaccggagttggtaacggtg 232  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  1064851 tctcttgcaagcatcaattccttgtgtgtaggtctcatcagatatagggatgcatagcgtttcaccacggataaccggagttagtaacggtg 1064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 12631456 - 12631691
Alignment:
Q  4 aattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagggtt 103  Q
    |||||||||||||| ||||| |||||||| || ||||| |||||||||||| |||||||||| ||||| ||||| ||||||||| |  ||| |||||| |    
T  12631456 aattcaaaatacccctttcctagtggcgttatcttccatggcccaacattcttccaaagttgctgaagctttgtctgaacctcccggaatccatagggct 12631555  T
Q  104 tgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgtttc 203  Q
    | |||||||| ||||| |||| || |||||  |||| | |||||| | ||||||||||| || ||||| |||||||| | |||||||| ||||| |||||    
T  12631556 tatcgcccttgcttaatatgaatcggccccataaatttttcttgcaagcatcaattccttgtttgtagctctcatcataaatagggatacatagcgtttc 12631655  T
Q  204 accacggataaccggagttggtaacggtgatgatgt 239  Q
    ||||||||||||||||| |||||||||||| |||||    
T  12631656 accacggataaccggagatggtaacggtgaagatgt 12631691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26656163 - 26655950
Alignment:
Q  19 tttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagggtttgtcgcccttactta 118  Q
    ||||||||||||||||| ||||| || ||||  || ||||||||||||||||| ||||| || ||||||   |||| |||||||||||| || ||| | |    
T  26656163 tttcccagtggcgtcatcttccatgggccaatgtttgtccaaagttgttgaagctttgtctgtacctccctcgatccatagggtttgtctcctttattca 26656064  T
Q  119 agatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgtttcaccacggataaccgg 218  Q
    ||||||||||||| || |  | || ||||| | | ||||||||  |||  |||||||| ||||| || ||||||||||| || |  |||||||||| |||    
T  26656063 agatgagtctgccacggaggtttcgcttgcaagcctcaattccctgtgcataggtctcgtcagagattgggatgcatagcgtcttgccacggataatcgg 26655964  T
Q  219 agttggtaacggtg 232  Q
    ||||||||| ||||    
T  26655963 agttggtaatggtg 26655950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6324 - 6099
Alignment:
Q  1 tagaattcaaaatacccttttcccagtggcgtcatattccaaggcccaacattcgtccaaagttgttgaagatttgtttgaacctcctgtgatcaatagg 100  Q
    ||||||||||| |||||||| || |||||| |||| ||||| || |||||| || |||||||||| ||||| |||||  |||| ||  |  ||| |||||    
T  6324 tagaattcaaagtaccctttgcctagtggcttcatcttccatgggccaacactcttccaaagttgctgaagctttgtccgaacttcacggaatccatagg 6225  T
Q  101 gtttgtcgcccttacttaagatgagtctgccccgaaaatatctcttgctaccatcaattcctcgtgtgtaggtctcatcagatatagggatgcatagtgt 200  Q
    | ||||| ||||| ||||| || |||| |  ||| |||| ||| || | | |||| |||||| ||   ||| |||||||||| ||||| ||||| || ||    
T  6224 gcttgtctcccttgcttaaaattagtcgg--ccgtaaatttcttttacaagcatctattccttgttcatagctctcatcagaaataggaatgcagagagt 6127  T
Q  201 ttcaccacggataaccggagttggtaac 228  Q
    |||||||||||||  ||| |||||||||    
T  6126 ttcaccacggatattcggtgttggtaac 6099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 27515956 - 27515896
Alignment:
Q  172 gtctcatcagatatagggatgcatagtgtttcaccacggataaccggagttggtaacggtg 232  Q
    ||||||||||| ||||  ||||| || ||||| ||||||||||||||||||||||||||||    
T  27515956 gtctcatcagaaatagaaatgcagagagtttccccacggataaccggagttggtaacggtg 27515896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University