View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_low_3 (Length: 565)
Name: NF19195_low_3
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 110 - 551
Target Start/End: Original strand, 42158450 - 42158901
Alignment:
| Q |
110 |
ttcaaagactttctggcatcggaaacagctttcctatcttccgtaacatacttaagatgatatttgaccaatttcctaaaggattgcatcaacccagtc- |
208 |
Q |
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| T |
42158450 |
ttcaaagactttctggcatcggaaacagctttcctatcttcggtaacaaccttaagatgatatttgaccaatttcctaaaggattgcatcaacccagtca |
42158549 |
T |
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| Q |
209 |
--------cctttactctttctcggccatttacgcatgatttcatcattacagcccttaaa-ctctttctcaagtcccctcagttttttcaaggtgcgag |
299 |
Q |
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| T |
42158550 |
acccagtccctttactctttctcggccatttacgcatgatttcatcattacagcccttaaaactttttctcaagtcccctcagttttttcaaggtgcaag |
42158649 |
T |
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| Q |
300 |
aatcgtttgtagcattctcgaacatgagaatctcaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgag |
399 |
Q |
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| T |
42158650 |
aatcgtttgtagcattctcgaacatgagaatcttaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgag |
42158749 |
T |
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| Q |
400 |
tagagagcgttgattgtcaaggagatctaagattgaatggtttttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcagga |
499 |
Q |
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| T |
42158750 |
tagaaagcgttgattgtcaaggagatctaagattgaatggttcttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcagga |
42158849 |
T |
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| Q |
500 |
gacttgaaagtaggcagagttacttcggagccatgagaagcgatgaagtttg |
551 |
Q |
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| T |
42158850 |
gacttgaaagtaggcagagttatttcggagccatgagaagcgatgaagtttg |
42158901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42158323 - 42158362
Alignment:
| Q |
1 |
aaaataacatttatcaaaatagaagtctaatgccgataac |
40 |
Q |
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| T |
42158323 |
aaaataacatttatcaaaataggagtctaatgccgataac |
42158362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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