View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_low_4 (Length: 438)
Name: NF19195_low_4
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 43255922 - 43256188
Alignment:
| Q |
1 |
tggatgaattgatgaattctgcaacagtcgatgaagaaattaatgcaggaagtactactcatgtttttacttcaggtttgcaatcaagaaataagaggag |
100 |
Q |
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| T |
43255922 |
tggatgaattgatgaattctgcaacagtcgatgaagaaattaatgcaggaagtactactaatgtttttacttcaggtttgcaatcaagaaataagtggag |
43256021 |
T |
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| Q |
101 |
ataatttaggacctagaattagagtgtcnnnnnnnnctaaatgtaagaacatgtatgatgtaattatccacaaggaattttaaggtacatatctttatct |
200 |
Q |
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| T |
43256022 |
ataatttaggacctagaattagagtgtcttttttttctaaatgtaagaacatgtatgatgtaattatccacaaggaattttaaggtacatatatttatct |
43256121 |
T |
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| Q |
201 |
caaaagatcactagctgcatgatttgcagctttctttgcatcgggcctaaaaaattgtataggctga |
267 |
Q |
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| T |
43256122 |
caaaagatcactagctgcatgatttgcagctttctttgcatcgggcctaaaaaattgtataggctga |
43256188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 43256276 - 43256364
Alignment:
| Q |
335 |
aaaaccagtactggatgattgtcaatttgcactctccattattgacaacatttagtacagatatgtcacacgccaatacatgtgttatg |
423 |
Q |
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| T |
43256276 |
aaaaccagtactggatgattgtcaatttgcactctccattattgacaacatttagtacagatatgtcacacgccaatacatgtgttatg |
43256364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 43258218 - 43258289
Alignment:
| Q |
147 |
gaacatgtatgatgtaattatccacaaggaattttaaggtacatatctttatctcaaaagatcactagctgca |
219 |
Q |
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| T |
43258218 |
gaacatgtatgatgtaattaaccagagggaattttaaggtacagatctttttctc-agagatcactagctgca |
43258289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 43257992 - 43258075
Alignment:
| Q |
22 |
caacagtcgatgaagaaattaatgcaggaagtactactcatgtttttacttcaggtttgcaatcaagaaataagaggagataat |
105 |
Q |
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| T |
43257992 |
caacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgctatcaagaaataggtggagataat |
43258075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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