View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19195_low_9 (Length: 345)
Name: NF19195_low_9
Description: NF19195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19195_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 29664078 - 29664384
Alignment:
| Q |
16 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
115 |
Q |
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| T |
29664078 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
29664177 |
T |
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| Q |
116 |
actcctacactcccttcttcacctcatcaccaaaatatgtctcaacactggtctgattattgatagatttaaaatgattaaagacagttaaaatcaatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29664178 |
actcctacactcccttcttcacctcatcaccaaa--atgtctcaacactggtctgattattgatagatttaaaatgattaaagacagttaacatcaatgt |
29664275 |
T |
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| Q |
216 |
tgacgattaaatttatttatttattagatatcacaccatgaaaaaatttatagttgatacatccttctttgatttataacaatcgagaaggaagagaatt |
315 |
Q |
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| T |
29664276 |
tgacgattaaattaattcatttattagatatca---catgaaaaaatttatagttgatatatccttctttgatttataacaatggagaaggaagagaatt |
29664372 |
T |
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| Q |
316 |
atgccactacct |
327 |
Q |
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|||||||||||| |
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| T |
29664373 |
atgccactacct |
29664384 |
T |
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