View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19196_low_1 (Length: 504)
Name: NF19196_low_1
Description: NF19196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19196_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 55 - 490
Target Start/End: Original strand, 17995805 - 17996233
Alignment:
| Q |
55 |
ttcagattcaggtactcatcaatcaccgctctcctcttaaaggaagcttggatcatggttacgtccatcctctttctcccaatggtgtaatcatcaaaat |
154 |
Q |
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| T |
17995805 |
ttcagattcaggtgctcatcaatcacccctctcctcttagaagaaacttggatcatggctacatccaacctctttctcccaattgtgtaatcatcaaaat |
17995904 |
T |
|
| Q |
155 |
ctaagaataccccaaacaaagagccaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccctactatt |
254 |
Q |
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| T |
17995905 |
ctaagaacaccccaaacaaagagtcaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccatactatc |
17996004 |
T |
|
| Q |
255 |
tgccgccaactgaggtgtccaccttctaaccgaagaaaacattgaataacaccaagctagatggctattgtgaactggatcaatatccttcatacattca |
354 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| || |||||||||||||||| |||| |
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| T |
17996005 |
tgccaccaactgaggtgtccaccttctaaccgaagaa-------aatatcaccaagctagatggctattgcgaaccgggtcaatatccttcataccttca |
17996097 |
T |
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| Q |
355 |
atatgcaggagcatctttctgtctcccatctctgtgactttaacaccttgaatgccttccataaccaaagcttgttgcacctccaaaacatcattatgat |
454 |
Q |
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| T |
17996098 |
atatgcaaaagcatctttctgtctcccatctctatgactttaacacctcgaatgccttccataaccaaagcttgttgcacctccaaagcatccttctgat |
17996197 |
T |
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| Q |
455 |
ggaacagttcccctataaaggcccactgcaaatagt |
490 |
Q |
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| T |
17996198 |
ggaacagttcccccataaaggtccactgcaaatagt |
17996233 |
T |
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