View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19196_low_3 (Length: 231)

Name: NF19196_low_3
Description: NF19196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19196_low_3
NF19196_low_3
[»] chr4 (3 HSPs)
chr4 (15-210)||(36912622-36912815)
chr4 (150-207)||(9521879-9521936)
chr4 (152-212)||(23499433-23499493)
[»] chr7 (4 HSPs)
chr7 (150-206)||(30969761-30969817)
chr7 (147-214)||(19267362-19267429)
chr7 (152-206)||(37757518-37757572)
chr7 (152-206)||(37763266-37763320)
[»] chr6 (3 HSPs)
chr6 (146-214)||(14536123-14536191)
chr6 (150-214)||(14518629-14518693)
chr6 (150-212)||(5736388-5736450)
[»] chr8 (1 HSPs)
chr8 (152-206)||(39421524-39421578)
[»] chr1 (1 HSPs)
chr1 (147-213)||(51672465-51672531)
[»] chr2 (1 HSPs)
chr2 (150-213)||(1070725-1070788)
[»] chr3 (2 HSPs)
chr3 (156-206)||(39736684-39736734)
chr3 (146-203)||(41417151-41417208)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 36912622 - 36912815
Alignment:
Q  15 tcaggttatttggagcgttgttgtgtgagttcattgaccattgaggaatcaaattatttagggatggtgtgactgactgtaatgaggctatttctcaggt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36912622 tcaggttatttggagcgttgttgtgtgagttcattgaccattgaggaatcaaattatttagggatggtgtgactgactgtaatgaggccatttctcaggt 36912721  T
Q  115 taaaacaacttcttggag-ttggtttgtgtttcgagtaaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagat 210  Q
    |||||||||||||||||| ||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36912722 taaaacaacttcttggagtttggtttgtgtttcgagtaaagtg---agtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagat 36912815  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 9521936 - 9521879
Alignment:
Q  150 taaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaa 207  Q
    |||||||||||||||||||| ||||| |||| |   ||||||||||||||||||||||    
T  9521936 taaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgatttgttaa 9521879  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 23499493 - 23499433
Alignment:
Q  152 aagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgt 212  Q
    ||||||||||||||||||  || | |||||||  ||||||||||||||||||||| |||||    
T  23499493 aagtgtaaagtgagaaaattaagggttgttattttaacaaactcatgatttgttatgatgt 23499433  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 30969761 - 30969817
Alignment:
Q  150 taaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgatttgtta 30969817  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 19267429 - 19267362
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    |||||||||||||| |||||||| ||| | |||||||  ||||||||||||||||||||| |||||||    
T  19267429 gagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgatttgttatgatgtac 19267362  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 37757572 - 37757518
Alignment:
Q  152 aagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||| ||||||| ||||| |||||||  |||||||||||||| ||||||    
T  37757572 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgtta 37757518  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 37763320 - 37763266
Alignment:
Q  152 aagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||| ||||||| ||||| |||||||  |||||||||||||| ||||||    
T  37763320 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgtta 37763266  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 14536123 - 14536191
Alignment:
Q  146 cgagtaaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    ||||| |||||||||||||||||| ||||| ||||||| | ||||||||| |||||||||| |||||||    
T  14536123 cgagtgaagtgtaaagtgagaaaatcaaaggttgttattgcaacaaactcgtgatttgttatgatgtac 14536191  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 14518629 - 14518693
Alignment:
Q  150 taaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    |||||||||||||||||||| |||  ||||||||  ||| ||||||||||||||||| |||||||    
T  14518629 taaagtgtaaagtgagaaaatcaagaattgttattataagaaactcatgatttgttatgatgtac 14518693  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 5736388 - 5736450
Alignment:
Q  150 taaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgt 212  Q
    |||||||||||||||||||| ||| | ||||||| |||| ||| | ||||||||||| |||||    
T  5736388 taaagtgtaaagtgagaaaatcaatggttgttattgtaagaaattaatgatttgttatgatgt 5736450  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 39421524 - 39421578
Alignment:
Q  152 aagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  39421524 aagtgtaaagtgagaaaatcaaaggttgttattttaacaaactcatgatttgtta 39421578  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 51672465 - 51672531
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgta 213  Q
    |||| |||||||| ||||||||| ||||| ||||||| ||| |||||||||||||||||| ||||||    
T  51672465 gagttaagtgtaacgtgagaaaatcaaaggttgttattgtatcaaactcatgatttgttatgatgta 51672531  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 1070788 - 1070725
Alignment:
Q  150 taaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgttaagatgta 213  Q
    ||||||||||||||| ||||  || | |||||||| ||||||| ||||||||||||||||||||    
T  1070788 taaagtgtaaagtgaaaaaataaaggtttgttatcataacaaattcatgatttgttaagatgta 1070725  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 39736734 - 39736684
Alignment:
Q  156 gtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    ||||||| |||||| ||||| ||||||| |||||||||||||| |||||||    
T  39736734 gtaaagtaagaaaatcaaaggttgttatggtaacaaactcatggtttgtta 39736684  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 41417151 - 41417208
Alignment:
Q  146 cgagtaaagtgtaaagtgagaaaaccaaagattgttatcgtaacaaactcatgatttg 203  Q
    |||| |||||||||||| |||||| ||| | ||||||| ||||||||||| |||||||    
T  41417151 cgagaaaagtgtaaagtaagaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

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