View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19196_low_4 (Length: 207)

Name: NF19196_low_4
Description: NF19196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19196_low_4
NF19196_low_4
[»] chr2 (12 HSPs)
chr2 (22-207)||(31845475-31845662)
chr2 (138-207)||(19945702-19945771)
chr2 (120-205)||(14131219-14131308)
chr2 (120-207)||(20143029-20143120)
chr2 (120-207)||(3167957-3168047)
chr2 (153-205)||(37714486-37714538)
chr2 (138-207)||(13716688-13716757)
chr2 (138-207)||(27007230-27007299)
chr2 (150-207)||(35457461-35457518)
chr2 (150-207)||(38320190-38320247)
chr2 (122-199)||(31264827-31264908)
chr2 (147-204)||(32976007-32976064)
[»] chr5 (9 HSPs)
chr5 (138-207)||(3040238-3040307)
chr5 (138-207)||(30700848-30700917)
chr5 (147-207)||(40519239-40519299)
chr5 (147-205)||(34280093-34280151)
chr5 (150-207)||(30071832-30071889)
chr5 (147-205)||(20359976-20360034)
chr5 (138-207)||(30735299-30735368)
chr5 (147-195)||(9666903-9666951)
chr5 (151-207)||(25493880-25493936)
[»] chr1 (9 HSPs)
chr1 (120-207)||(10061653-10061740)
chr1 (121-207)||(29657425-29657515)
chr1 (147-205)||(26470007-26470065)
chr1 (121-207)||(35413087-35413177)
chr1 (146-205)||(4684531-4684590)
chr1 (149-207)||(43537134-43537192)
chr1 (162-207)||(23906608-23906653)
chr1 (147-207)||(9113447-9113508)
chr1 (147-195)||(49313699-49313747)
[»] chr8 (5 HSPs)
chr8 (147-207)||(5718434-5718494)
chr8 (124-205)||(25124433-25124518)
chr8 (147-207)||(29414443-29414503)
chr8 (168-203)||(24068125-24068160)
chr8 (123-200)||(33543415-33543494)
[»] chr7 (7 HSPs)
chr7 (122-205)||(20125653-20125740)
chr7 (150-207)||(21882759-21882816)
chr7 (147-207)||(1985067-1985127)
chr7 (120-207)||(46413699-46413790)
chr7 (147-205)||(22631543-22631601)
chr7 (158-198)||(23730503-23730543)
chr7 (140-205)||(19511473-19511538)
[»] chr3 (9 HSPs)
chr3 (147-205)||(2671966-2672024)
chr3 (147-205)||(31192122-31192180)
chr3 (138-207)||(18271941-18272010)
chr3 (151-207)||(34905907-34905963)
chr3 (138-207)||(26443010-26443079)
chr3 (147-197)||(45852921-45852971)
chr3 (122-207)||(1632869-1632958)
chr3 (165-205)||(48897685-48897725)
chr3 (147-205)||(10593448-10593506)
[»] chr4 (4 HSPs)
chr4 (147-207)||(42504181-42504241)
chr4 (147-202)||(30220765-30220820)
chr4 (150-205)||(24060639-24060694)
chr4 (147-205)||(16528629-16528687)
[»] chr6 (7 HSPs)
chr6 (120-206)||(34713563-34713653)
chr6 (116-205)||(6784654-6784747)
chr6 (123-207)||(32871711-32871800)
chr6 (122-199)||(3855694-3855774)
chr6 (147-200)||(2130479-2130532)
chr6 (147-195)||(11301909-11301957)
chr6 (138-207)||(28867246-28867315)
[»] scaffold0194 (1 HSPs)
scaffold0194 (121-198)||(27066-27147)
[»] scaffold0122 (1 HSPs)
scaffold0122 (164-205)||(18697-18738)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 31845662 - 31845475
Alignment:
Q  22 catcaaagtttattcaatgcatgtttagatttatagtcaatat-gacaaaattacagtgaattagtgtaattttgacnnnnnnn-tactcatatattaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||    
T  31845662 catcaaagtttattcaatgcatgtttagatttatagtcaatattgacaaaattacagtgaattagtgtaattttgacaaaaaaaatactcatatattaag 31845563  T
Q  120 aagggaaatgatagatacacaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31845562 aagggaaatgatagatacacaaattttatcaagaaaatttttagacagtgtatttgctaacatcttaccttaattacacaccattacc 31845475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 19945702 - 19945771
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  19945702 acaaaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacc 19945771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 14131308 - 14131219
Alignment:
Q  120 aagggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||||||||    |||| || || ||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||    
T  14131308 aagggaaatgatagatacagtgacaaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacaccatta 14131219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 20143120 - 20143029
Alignment:
Q  120 aagggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||||||||    |||| || |||||||||||||  ||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  20143120 aagggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattacc 20143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 3168047 - 3167957
Alignment:
Q  120 aagggaaatgatagatac---acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||||||    ||||| || |||||||||||||||| | ||| |||||||||||| ||||| ||||||||||| |||||||    
T  3168047 aagggaaatgatagataagtgacaaaatttatcaagaaaatttttaaatagtatatttgctaacacctttctttaattacacatcattacc 3167957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 37714538 - 37714486
Alignment:
Q  153 aaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  37714538 aaaattttaaggcagtgtatttgctaacacctttccttaattacacaccatta 37714486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 13716688 - 13716757
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||  | |||||||||||||||||| |||| ||||||||||||| ||||||    
T  13716688 acaaaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacc 13716757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 27007299 - 27007230
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||| |||||||||||||| |||||  ||||||||| ||||||| ||||||    
T  27007299 acaaaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacc 27007230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 35457518 - 35457461
Alignment:
Q  150 aagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||| ||| ||| |||||| |||||  ||||||||||||||||||||||||    
T  35457518 aagaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacc 35457461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 38320190 - 38320247
Alignment:
Q  150 aagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||| |||||||||||||| |||||  |||||||| ||||||| |||||||    
T  38320190 aagaaaattttaagacagtgtatttgataacacatttccttatttacacatcattacc 38320247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 31264908 - 31264827
Alignment:
Q  122 gggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacaca 199  Q
    |||||||||||||||||    |||| || |||||  ||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  31264908 gggaaatgatagatacagtgacaaaatttatcaaacaaattttaagatagtgtatttgctaacacttttccttaattacaca 31264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 32976007 - 32976064
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatt 204  Q
    |||||||||||||  | ||||||||||| |||||| |||| |||||||||| ||||||    
T  32976007 atcaagaaaatttcaaaacagtgtatttactaacaccttttcttaattacataccatt 32976064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 3040238 - 3040307
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  3040238 acaaaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacc 3040307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 30700848 - 30700917
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || ||||| |||||||| |||||||||||||||||||| |||| |||||||||||| |||||||    
T  30700848 acaaaatttatcaaaaaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacc 30700917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 40519299 - 40519239
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||| ||||||||||||||| || || ||| |||||||||||| |||||||    
T  40519299 atcaagaaaattttaagacagtgtatttgccaatattttttcttaattacacatcattacc 40519239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 34280093 - 34280151
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||| || ||||| || ||||||||||| ||||||||||||||||||||| |||||||    
T  34280093 atcaataatattttaagtcagtgtatttgttaacatctttccttaattacataccatta 34280151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 30071889 - 30071832
Alignment:
Q  150 aagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||| ||||| |||||||||||||  ||||||| |||||||||||| ||||    
T  30071889 aagaaaattttaagacaatgtatttgctaactcctttcctcaattacacaccactacc 30071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 20360034 - 20359976
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||||||| |||  |||| || |||||||||||| ||||| |||||||||||||||||    
T  20360034 atcaagaaagtttcaagacggtatatttgctaacacctttctttaattacacaccatta 20359976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 30735299 - 30735368
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||  | ||||||||||||||||||  ||| ||||||||| || |||||||    
T  30735299 acaaaatttatcaagaaaatttcaaaacagtgtatttgctaacactttttcttaattacccagcattacc 30735368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 9666903 - 9666951
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaatta 195  Q
    |||||||||||||| |||  ||||||||||||||| |||||| ||||||    
T  9666903 atcaagaaaattttaagatggtgtatttgctaacacctttccataatta 9666951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 25493936 - 25493880
Alignment:
Q  151 agaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||  ||||||| |||||| ||| |  ||||||||||||||||||||||||    
T  25493936 agaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacc 25493880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 10061740 - 10061653
Alignment:
Q  120 aagggaaatgatagatacacaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||||||||| ||||| || |||||||||||||  ||||||| ||||||||||||  |||||||||||||||| |||||||    
T  10061740 aagggaaatgatagatagacaaaatttatcaagaaaatttcaagacagtttatttgctaacacatttccttaattacacatcattacc 10061653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 29657515 - 29657425
Alignment:
Q  121 agggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||||||||||    ||||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||| | |||||||    
T  29657515 agggaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattacatatcattacc 29657425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 26470065 - 26470007
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  26470065 atcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccatta 26470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 35413177 - 35413087
Alignment:
Q  121 agggaaatgatagata----cacaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||||||||     ||||| || |||||||||||||  ||| |||||||||| ||||| |||||||||||||||||| ||||||    
T  35413177 agggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacc 35413087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 4684590 - 4684531
Alignment:
Q  146 catcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||||||||||||| | |||   |||||||||||| |||||||||||||||||||||||    
T  4684590 catcaagaaaattttcaaacaacatatttgctaacacctttccttaattacacaccatta 4684531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 43537134 - 43537192
Alignment:
Q  149 caagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||  |||||||||||||| |||||  |||| |||||||||||||||||||    
T  43537134 caagaaaatttcaagacagtgtatttgttaacacatttctttaattacacaccattacc 43537192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 23906608 - 23906653
Alignment:
Q  162 agacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||    
T  23906608 agacaatgtatttgctaacacctttctttaattacacaccattacc 23906653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 9113447 - 9113508
Alignment:
Q  147 atcaagaaaatttttagacagtgta-tttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||| ||| |||||| |||||||| | ||||||||||||||| | |||||||    
T  9113447 atcaagaaaattttaagagagtgtattttgctaaaacctttccttaattacagatcattacc 9113508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 49313747 - 49313699
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaatta 195  Q
    ||||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  49313747 atcaagaaatttttttgacggtgtatttgctaatttctttccttaatta 49313699  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 5718434 - 5718494
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  5718434 atcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattacc 5718494  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 25124518 - 25124433
Alignment:
Q  124 gaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||||    |||| || |||||||||||||  |||||||||||||| ||| | |||| |||||||||||| |||||    
T  25124518 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcatta 25124433  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 29414503 - 29414443
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||  | |||||| ||||| ||||| ||||||||||||| |||||||||||    
T  29414503 atcaagaaaatttcaaaacagtgcatttgttaacacctttccttaattaaacaccattacc 29414443  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 24068125 - 24068160
Alignment:
Q  168 tgtatttgctaacatctttccttaattacacaccat 203  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24068125 tgtatttcctaacatctttccttaattacacaccat 24068160  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 33543494 - 33543415
Alignment:
Q  123 ggaaatgatagatac--acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacac 200  Q
    |||||||||||||||  ||||| || ||||||||||| |  ||||||| |||||| ||||| ||||  ||||||||||||    
T  33543494 ggaaatgatagatactgacaaaatttatcaagaaaatatcaagacagtatatttgttaacacctttttttaattacacac 33543415  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 20125740 - 20125653
Alignment:
Q  122 gggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||||||    ||||||| |||||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||    
T  20125740 gggaaatgatagatacaatgacaaattttatcaagaaaatttgaagacagtgtatttgctaatacctttctttaattacacaccatta 20125653  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 21882759 - 21882816
Alignment:
Q  150 aagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||    
T  21882759 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacc 21882816  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 1985127 - 1985067
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||| ||| ||||||||||||||||  |||||||||||||| |||||||||    
T  1985127 atcaagaaaattttaagatagtgtatttgctaacacatttccttaattacataccattacc 1985067  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 46413699 - 46413790
Alignment:
Q  120 aagggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||||||||    |||| || || || |||||||  |||||||||||||| ||||| ||||||||||||||||| |||||||    
T  46413699 aagggaaatgatagatacattgacaaaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacc 46413790  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 22631601 - 22631543
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||  |||| ||||||| ||||||| |||||||||||||||||| ||||    
T  22631601 atcaagaaaatttcaagacggtgtattagctaacacctttccttaattacacactatta 22631543  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23730503 - 23730543
Alignment:
Q  158 ttttagacagtgtatttgctaacatctttccttaattacac 198  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  23730503 ttttagacagtgtatttgttaacacctttccttaattacac 23730543  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 19511538 - 19511473
Alignment:
Q  140 aaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||| ||||| |||||||  |||||||||||||  ||||| |||||||||||||| ||| ||||    
T  19511538 aaattttatcaaaaaaatttcgagacagtgtatttattaacacctttccttaattactcactatta 19511473  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 2672024 - 2671966
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  2672024 atcaagaaaattttaagacagtgtatttgttaacatctttccttaattacacatcatta 2671966  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 31192180 - 31192122
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||    
T  31192180 atcaagaaaattttaagacagggtatttgctaatatctttccttaattacacactatta 31192122  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 18271941 - 18272010
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||||    
T  18271941 acaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacc 18272010  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 34905963 - 34905907
Alignment:
Q  151 agaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||    
T  34905963 agaaaattttaagacagtgtatttgctaacacctttccttaattatacatcattacc 34905907  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 26443079 - 26443010
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||| || |||||||||||||  |||||||||||||| ||||| ||||  |||||||||||||||||||    
T  26443079 acaaaatttatcaagaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacc 26443010  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 45852921 - 45852971
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattaca 197  Q
    |||||||||||||| |||| ||||||||||||||| |||| ||||||||||    
T  45852921 atcaagaaaattttaagaccgtgtatttgctaacaccttttcttaattaca 45852971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 1632958 - 1632869
Alignment:
Q  122 gggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||||||    |||| || ||||| ||||||   |||||||||||||| |||||  |||| |||||||||||||||||||    
T  1632958 gggaaatgatagatacagtgacaaaatttatcaaaaaaattccaagacagtgtatttgttaacacgtttctttaattacacaccattacc 1632869  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 48897685 - 48897725
Alignment:
Q  165 cagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  48897685 cagtctatttgctaacatcttttcttaattacacaccatta 48897725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 10593448 - 10593506
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||| ||| |||||||||| ||||| |||| | |||||| |||||||||    
T  10593448 atcaagaaaattttaagatagtgtatttgttaacaccttttcctaattatacaccatta 10593506  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 42504181 - 42504241
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||    
T  42504181 atcaagaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacc 42504241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 30220820 - 30220765
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacacca 202  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  30220820 atcaagaaaattttaagacagtgtatttgctaacacttttccttaattacacacca 30220765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 24060694 - 24060639
Alignment:
Q  150 aagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||    
T  24060694 aagaaaattttaaaacagtgtatttgctaacacatttccttaattacacaccatta 24060639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 16528687 - 16528629
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    |||||||||||||| ||| |||||||||| |||||  |||| |||||||||||||||||    
T  16528687 atcaagaaaattttaagatagtgtatttgttaacacatttctttaattacacaccatta 16528629  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 34713653 - 34713563
Alignment:
Q  120 aagggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattac 206  Q
    |||||||||||||||||||    |||| || |||||||||||||| ||| |||||||||| ||||| |||| ||||| |||||||||||||    
T  34713653 aagggaaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattac 34713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 6784654 - 6784747
Alignment:
Q  116 taagaagggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||| ||||||||||||||| |    |||| | ||||||||||||||  ||| |||||||||||||||| |||| ||||||||||||||||||    
T  6784654 taagatgggaaatgatagatatagtgacaaaatgcatcaagaaaatttcgagatagtgtatttgctaacaccttttcttaattacacaccatta 6784747  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 32871711 - 32871800
Alignment:
Q  123 ggaaatgatagataca----caaatttcatcaagaaaattttta-gacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    ||||||||||||||||    |||| || ||||||||||||| || |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  32871711 ggaaatgatagatacaatgacaaaatttatcaagaaaatttctaagacagtgtatttactaacatttttccttaattacacactattacc 32871800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 3855694 - 3855774
Alignment:
Q  122 gggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacaca 199  Q
    |||||||||||||||||    |||| || |||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  3855694 gggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatt-gctaacacctttccttaattacaca 3855774  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 2130479 - 2130532
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacac 200  Q
    |||||||||||||  | || ||||||||||||||| ||||||||||||||||||    
T  2130479 atcaagaaaatttcaaaacggtgtatttgctaacacctttccttaattacacac 2130532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 11301957 - 11301909
Alignment:
Q  147 atcaagaaaatttttagacagtgtatttgctaacatctttccttaatta 195  Q
    |||||||||||||| | | ||||||||| ||||||||||||||||||||    
T  11301957 atcaagaaaattttaaaatagtgtatttcctaacatctttccttaatta 11301909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 28867315 - 28867246
Alignment:
Q  138 acaaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacacaccattacc 207  Q
    |||||||  |||||||||||||  ||||| |||||||||||| |  |||||||||||||| || ||||||    
T  28867315 acaaattgtatcaagaaaatttcaagacaatgtatttgctaaaacatttccttaattacatactattacc 28867246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 27066 - 27147
Alignment:
Q  121 agggaaatgatagataca----caaatttcatcaagaaaatttttagacagtgtatttgctaacatctttccttaattacac 198  Q
    ||||||||||||||||||    |||| || |||||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  27066 agggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacac 27147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 18738 - 18697
Alignment:
Q  164 acagtgtatttgctaacatctttccttaattacacaccatta 205  Q
    ||||||||||||||||||  ||||||||||||| ||||||||    
T  18738 acagtgtatttgctaacacatttccttaattactcaccatta 18697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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