View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19197_high_1 (Length: 590)

Name: NF19197_high_1
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19197_high_1
NF19197_high_1
[»] chr3 (14 HSPs)
chr3 (20-583)||(34468164-34468715)
chr3 (23-588)||(34522022-34522587)
chr3 (23-507)||(34487890-34488380)
chr3 (372-588)||(27629395-27629608)
chr3 (23-265)||(27629643-27629886)
chr3 (57-122)||(34469006-34469071)
chr3 (18-168)||(34488397-34488547)
chr3 (65-163)||(34509693-34509791)
chr3 (19-168)||(34522605-34522754)
chr3 (365-403)||(27623125-27623163)
chr3 (365-403)||(34509224-34509262)
chr3 (40-168)||(27629927-27630055)
chr3 (241-327)||(34509298-34509384)
chr3 (233-265)||(27623261-27623293)
[»] chr6 (1 HSPs)
chr6 (356-389)||(28762149-28762182)


Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Complemental strand, 34468715 - 34468164
Alignment:
Q  20 tgttggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctat 119  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34468715 tgttagcggtggccatgatgtagtttcttcatacggcggcccagagaggtaaccaacaccagagctgtaccaagctacctcaactcaatcagcaccctat 34468616  T
Q  120 caagatttggtgtctcctccacctgctccccaatctgaggcaagttcatttcccagccacaagaggtgtctgaagttgaacaggatctgggacaaatgac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468615 caagatttggtgtctcctccacctgctccccaatctgaggcaagttcatttcccagccacaagaggtgtctgaagttgaacaggatctgggacaaatgac 34468516  T
Q  220 atttcattctggagactcattcccctcctccacaaagtaaatcatcgccgacgtttccctttcgctccggaaaggggagctatggcaagatatgtgttgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468515 atttcattctggagactcattcccctcctccacaaagtaaatcatcgccgacgtttccctttcgctccggaaaggggagctatggcaagatatgtgttgt 34468416  T
Q  320 tatggc-aaccannnnnnncccgagttaccttaaaaggaaggaccttcatcagtatgatgtaagttccactttgaatgatttgtataattactctttatc 418  Q
    |||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468415 tatggcaaaccatttttttcccgagttaccttaaaaggaaggaccttcatcagtatgatgtaagttccactttgaatgatttgtataattactctttatc 34468316  T
Q  419 cttttaattatacttactgctagtatttctgctcttggtcgcgtaggtaaccgttactccagaagcgacttctagaggtgtgaattgtgcaagtatggag 518  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468315 cttttaattatactta------------ctgctcttggtcgcgtaggtaaccgttactccagaagcgacttctagaggtgtgaattgtgcaagtatggag 34468228  T
Q  519 cagtttgtgaggtagtaagttgtatcatgattcatacttgggaaagagacttccctatgatgatg 583  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34468227 cagtttgtga-gtagtaagttgtatcatgattcatacttgggaaagagacttccctattatgatg 34468164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 23 - 588
Target Start/End: Complemental strand, 34522587 - 34522022
Alignment:
Q  23 tggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaa 122  Q
    |||||||||||||||||||||||||||||| |  |||  |  || ||||||| |||| |||||| ||||||| ||||||  || |||  || ||||||||    
T  34522587 tggcggtggccatgttgtagtttcttcatatggtggcagactgatgtaaccagcacc-gagctgcatcaagcaacctcagttccatctacatcctatcaa 34522489  T
Q  123 gatttggtgtctcctccacctgctccccaatctgaggcaagttcattt-cccagccacaagaggtgtctgaagttgaacaggatctgggacaaatgacat 221  Q
    | ||| ||||||||| ||||| |||||||||||||||||||||||||| |||| | || ||||||||||||||||||||| ||||| |||||||||||||    
T  34522488 gttttcgtgtctccttcacct-ctccccaatctgaggcaagttcattttcccaactaccagaggtgtctgaagttgaacaagatctaggacaaatgacat 34522390  T
Q  222 ttcattctg--gagactcattcccctcctccacaaagtaaatcatcgccgacgtttccct-ttcgctccggaaaggggagctatggcaagatatgtgttg 318  Q
    ||||||||   ||||| ||| || || ||||||||||||||||||| |    | || | | ||| |   ||||||||||||||||||||||  |||||||    
T  34522389 ttcattcttaagagacgcatgcctcttctccacaaagtaaatcatcactttgggtttcttcttctccttggaaaggggagctatggcaagaagtgtgttg 34522290  T
Q  319 ttatggcaa-ccannnnnnnc---ccgagttaccttaaaaggaaggaccttcatcagtatgatgtaagttccactttgaatgatttgtataattactc-- 412  Q
    ||||||||| |||       |   | ||||||||||  ||  |    ||| |||||||||||||||||||||||||| |||||||||||||||||||       
T  34522289 ttatggcaaaccaattttttctttctgagttacctttgaaaaac---cctccatcagtatgatgtaagttccactttcaatgatttgtataattacttac 34522193  T
Q  413 --tttatccttttaattatacttactgctagtatttctgctcttggtcgcgtaggtaaccgttactccagaagcgacttctagaggtgtgaattgtgcaa 510  Q
      |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||| ||| |||||||||||||||||||       
T  34522192 tgtttatccttttaattatacttattgctagtatttctgctcttggttgcgtaggtaacaattactccagaagagacgtctagaggtgtgaattgtgttg 34522093  T
Q  511 gtatggagcagtttgtgaggtagtaagttgtatcatgattcatacttgggaaagagacttccctatgatgatgtccat 588  Q
     |||||| ||  || ||||       | |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34522092 ttatggaacaacttctgag-------gctgtatcatgattcatacttgggaaagagacttccctattatgatggccat 34522022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 23 - 507
Target Start/End: Complemental strand, 34488380 - 34487890
Alignment:
Q  23 tggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaa 122  Q
    |||| ||| ||||||||||||||||||||| | ||||  |  || ||||||| |||| |||||| ||||||| |||| |  || |||  || ||||||||    
T  34488380 tggctgtgtccatgttgtagtttcttcatatggcggcagactgatgtaaccagcacc-gagctgcatcaagcaacctaagttccatctacagcctatcaa 34488282  T
Q  123 gatttggtgtctcctccacctgctccccaatctgaggcaagttcatttc-ccagccacaagaggtgtctgaagttgaacaggatctgggacaaatgacat 221  Q
    | ||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||| || |||| |||||||||||||    
T  34488281 gttttcgtgtctcctccacct-ctccccaatctgaggcaagttcattttaccagccaccagaggtgactgaagttgaatagaatctaggacaaatgacat 34488183  T
Q  222 ttcattctg--gagactcattcccctcctccacaaagtaaatcatcgccgacgtttccctttcgctccggaaaggggagctatggcaagatatgtgttgt 319  Q
    ||||||||   ||||| ||| || || |||||||| ||||||| |  |||| ||||||| |||     |||||||| |||||||||||||  ||||||||    
T  34488182 ttcattcttaagagacgcatgcctcttctccacaacgtaaatctttaccgaggtttccccttcttcttggaaagggcagctatggcaagaagtgtgttgt 34488083  T
Q  320 tatggcaaccannnnnnnccc----gagttaccttaaaaggaaggaccttcatcagtatgatgtaagttccactttgaatgatttgtataattactc--- 412  Q
    ||||| || |          |    |||||||||| |||  |    |||||||| ||||||||||||||||||||| |||||||||||||||||||        
T  34488082 tatggaaaaccgtttttcttcttctgagttacctttaaaaaac---ccttcatcggtatgatgtaagttccactttcaatgatttgtataattacttact 34487986  T
Q  413 -tttatccttttaattatacttactgctagtatttctgctcttggtcgcgtaggtaaccgttactccagaagcgacttctagaggtgtgaattgtg 507  Q
     |||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||  |||||||| |||||||||||||||||||||||||||    
T  34487985 gtttatccttttaattatacttattgctagtatttcttctcttggttgtgtaggtaacaattactccataagcgacttctagaggtgtgaattgtg 34487890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 372 - 588
Target Start/End: Complemental strand, 27629608 - 27629395
Alignment:
Q  372 tatgatgtaagttccactttgaatgatttgtataattactc----tttatccttttaattatacttactgctagtatttctgctcttggtcgcgtaggta 467  Q
    |||||||||||||||||||| ||| |||||||||||||||     |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  27629608 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 27629509  T
Q  468 accgttactccagaagcgacttctagaggtgtgaattgtgcaagtatggagcagtttgtgaggtagtaagttgtatcatgattcatacttgggaaagaga 567  Q
    ||  |||||||||||| ||||| |||||||||||  ||||| | |||||||||| |||||||       | |||||||||||||||||||||||||||||    
T  27629508 acaattactccagaagtgacttatagaggtgtgatctgtgctattatggagcagcttgtgag-------gctgtatcatgattcatacttgggaaagaga 27629416  T
Q  568 cttccctatgatgatgtccat 588  Q
    ||| || || |||||| ||||    
T  27629415 ctttccaattatgatggccat 27629395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 27629886 - 27629643
Alignment:
Q  23 tggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaa 122  Q
    ||||||||||||||||||||||||| |||| |  ||   |  || ||||||| |||| |||||| ||||||| |||| |  || |||  || ||||| ||    
T  27629886 tggcggtggccatgttgtagtttctccatatggtggaagactgatgtaaccagcacc-gagctggatcaagcaacctaagttccatctacagcctatgaa 27629788  T
Q  123 gatttggtgtctcctccacctgctccccaatctgaggcaagttcattt-cccagccacaagaggtgtctgaagttgaacaggatctgggacaaatgacat 221  Q
    | ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||| |||    
T  27629787 gttttcgtgtctcctccacct-ctccccaatctgaggcaagttcattttcccagccaccagaggtgtctgaagttgaacagaatctaggacaaatggcat 27629689  T
Q  222 ttcattct--ggagactcattcccctcctccacaaagtaaatcatc 265  Q
    ||||||||   ||||| |||  | || |||||||||||||||||||    
T  27629688 ttcattcttaagagacgcatgtctcttctccacaaagtaaatcatc 27629643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 34469006 - 34469071
Alignment:
Q  57 ggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaa 122  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  34469006 ggcccagagaggtaaccaaccccagagctgtaccaagctacctcaactcaatcagcaccctatcaa 34469071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 34488397 - 34488547
Alignment:
Q  18 agtgttggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccct 117  Q
    |||| ||| |||||||| |  |||||| ||||||| | |||||||   ||||||||| |||| |||||| ||||||| |||  || || ||| |||||||    
T  34488397 agtgctggaggtggccaaggcgtagttccttcatatggcggcccaccaaggtaaccaccacctgagctgcatcaagcaaccaaaattccatctgcaccct 34488496  T
Q  118 atcaagatttggtgtctcctccacctgctccccaatctgaggcaagttcat 168  Q
    | | || ||| |||||||||| |||||||||||| || ||| |||||||||    
T  34488497 aaccagtttttgtgtctcctctacctgctccccattccgagacaagttcat 34488547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 34509791 - 34509693
Alignment:
Q  65 gaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaagatttggtgtctcctccacctgctccccaatctgaggcaag 163  Q
    |||||||||| || | |||||| | ||||||||||||  || |||  ||||| |||||| ||||||||||||||||||| ||| ||||||| |||||||    
T  34509791 gaggtaaccagcatccgagctgcaccaagctacctcagttccatctacacccgatcaagttttggtgtctcctccaccttctctccaatcttaggcaag 34509693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 34522605 - 34522754
Alignment:
Q  19 gtgttggcggtggccatgttgtagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcacccta 118  Q
    ||||||| |||||||| |  |||||| ||||||| | |||||||   ||||||||| |||| |||||| ||||||| |||| |  |  ||| || |||||    
T  34522605 gtgttggaggtggccaagacgtagttccttcatatggcggcccatcaaggtaaccaccacctgagctgcatcaagcaacctaagtttcatctgcccccta 34522704  T
Q  119 tcaagatttggtgtctcctccacctgctccccaatctgaggcaagttcat 168  Q
     | || ||| ||||||||||||||||||||||| || ||| |||||||||    
T  34522705 accagttttcgtgtctcctccacctgctccccattccgagacaagttcat 34522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 27623163 - 27623125
Alignment:
Q  365 tcatcagtatgatgtaagttccactttgaatgatttgta 403  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27623163 tcatcagtatgatgtaagttccactttcaatgatttgta 27623125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 34509262 - 34509224
Alignment:
Q  365 tcatcagtatgatgtaagttccactttgaatgatttgta 403  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  34509262 tcatcagtatgatgtaagttccactttcaatgatttgta 34509224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 27629927 - 27630055
Alignment:
Q  40 tagtttcttcatacgacggcccagagaggtaaccaacaccagagctgtatcaagctacctcaactcaatcagcaccctatcaagatttggtgtctcctcc 139  Q
    ||||| ||||||| | | |||||  |||||||||| |||   ||||| ||||||| |||| |  || ||| |||||||| | || ||| |||||||||||    
T  27629927 tagttccttcatatggcagcccaccgaggtaaccaccactttagctgcatcaagcaacctaagttccatctgcaccctaaccagttttcgtgtctcctcc 27630026  T
Q  140 acctgctccccaatctgaggcaagttcat 168  Q
    |||||||| |||||| ||| |||||||||    
T  27630027 acctgctctccaatccgagacaagttcat 27630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 34509384 - 34509298
Alignment:
Q  241 cccctcctccacaaagtaaatcatcgccgacgtttccctttcgctccggaaaggggagctatggcaagatatgtgttgttatggcaa 327  Q
    ||||||||||||||||||||||||| |  | ||||||| ||| | | ||||| ||||| |||| | |||  ||||||||||||||||    
T  34509384 cccctcctccacaaagtaaatcatcactaaggtttccccttctccctggaaaagggagttatgaccagaagtgtgttgttatggcaa 34509298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 27623293 - 27623261
Alignment:
Q  233 gactcattcccctcctccacaaagtaaatcatc 265  Q
    ||||||| |||||||||||||||||||||||||    
T  27623293 gactcatgcccctcctccacaaagtaaatcatc 27623261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 28762149 - 28762182
Alignment:
Q  356 gaaggaccttcatcagtatgatgtaagttccact 389  Q
    |||||| |||||||||||||||||||||||||||    
T  28762149 gaaggatcttcatcagtatgatgtaagttccact 28762182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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