View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_high_11 (Length: 355)
Name: NF19197_high_11
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_high_11 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 906580 - 906257
Alignment:
| Q |
16 |
atggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaggcttactgtaaacatgtaca |
115 |
Q |
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| T |
906580 |
atggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaagcttactgtaaacatgtaca |
906481 |
T |
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| Q |
116 |
agacaaaaatgtatacacatgacgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagc |
215 |
Q |
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| T |
906480 |
agacaaaaatgtatacacatgccgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagc |
906381 |
T |
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| Q |
216 |
agcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcact |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906380 |
agcaccatcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcact |
906281 |
T |
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| Q |
316 |
atcccactttcatcgtcaaccttt |
339 |
Q |
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| T |
906280 |
atcccactttcatcatcaaccttt |
906257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 141 - 339
Target Start/End: Original strand, 894188 - 894386
Alignment:
| Q |
141 |
tcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgatt |
240 |
Q |
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| T |
894188 |
tcaaaagttttgcaatctcgatgctaaagaagagagtgccttcttagatgaaccattttcacttgttgcaacagcagcaccaacactcaattccttaatt |
894287 |
T |
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| Q |
241 |
ctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaaccttt |
339 |
Q |
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| T |
894288 |
ctcttttgtatttccaagctttcatcaccttccatgattctctttacacagttggcaacttcttctcttttcactatcccactttcatcatcaatcttt |
894386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 1717 - 1535
Alignment:
| Q |
157 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
256 |
Q |
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| T |
1717 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
1618 |
T |
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| Q |
257 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaaccttt |
339 |
Q |
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| T |
1617 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaaccttt |
1535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 33257599 - 33257417
Alignment:
| Q |
157 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
256 |
Q |
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|||||||||| || |||||||||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || | |
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| T |
33257599 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
33257500 |
T |
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| Q |
257 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaaccttt |
339 |
Q |
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| T |
33257499 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaaccttt |
33257417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 8294162 - 8294338
Alignment:
| Q |
163 |
gctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagcttt |
262 |
Q |
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|||| |||||| |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||| ||||| || || ||||||| |
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| T |
8294162 |
gctagagaagaaagtgctttcctagaagaaccatgctcacttagcacagtagcagcaccaacactcaattctttgattttctttctaatttcaaagcttt |
8294261 |
T |
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| Q |
263 |
catcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaaccttt |
339 |
Q |
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|||| |||| ||||||||| |||| | ||| |||||||||||| ||| | |||||| ||||||| ||||||||| |
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| T |
8294262 |
catctcctttcatgattctttttatagctttggcaacttcctcttgttttataatcccagtttcatcatcaaccttt |
8294338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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