View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_high_18 (Length: 273)
Name: NF19197_high_18
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 45739019 - 45738776
Alignment:
| Q |
13 |
acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagnnnnnnn-gcaactcatgggttgggcaatagctttacacggcggcgccggc |
111 |
Q |
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| T |
45739019 |
acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagaaaaaaaagcaactcatgggttgggcaatagctttacacggcggcgccggc |
45738920 |
T |
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| Q |
112 |
gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg |
211 |
Q |
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| T |
45738919 |
gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg |
45738820 |
T |
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| Q |
212 |
cacctctagacgtcgttgagcttgttgtatgtattcatcattca |
255 |
Q |
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| T |
45738819 |
cacctctagacgtcgttgagcttgttgtatgtattcatcattca |
45738776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 45733488 - 45733355
Alignment:
| Q |
118 |
ccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctc |
217 |
Q |
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|||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
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| T |
45733488 |
ccattttcacttccaccggaagcccgtcagccacgcgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctc |
45733389 |
T |
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| Q |
218 |
tagacgtcgttgagcttgttgtatgtattcatca |
251 |
Q |
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| T |
45733388 |
tagacgtcgttgagcttgttgtatgtattcatca |
45733355 |
T |
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