View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19197_high_20 (Length: 256)

Name: NF19197_high_20
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19197_high_20
NF19197_high_20
[»] chr1 (3 HSPs)
chr1 (1-234)||(32253528-32253761)
chr1 (1-226)||(32243012-32243237)
chr1 (1-226)||(32248750-32248975)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32253761 - 32253528
Alignment:
Q  1 agcagcgtgctgagtggtttcagctcagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253761 agcagcgtgctgagtggtttcagctcagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagagga 32253662  T
Q  101 gccaaatcgtgagagtagagggcggtctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253661 gccaaatcgtgagagtagagggcggtctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatga 32253562  T
Q  201 agggagatcaagacaccttcttagacgagaacat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  32253561 agggagatcaagacaccttcttagacgagaacat 32253528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32243237 - 32243012
Alignment:
Q  1 agcagcgtgctgagtggtttcagctcagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagagga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32243237 agcagtgtgctgagtggtttcagctcagagtttttagcgcaggcactcaacacggatcaggatacagctaagagacttcaatctccacgcgaccagagga 32243138  T
Q  101 gccaaatcgtgagagtagagggcggtctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatga 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  32243137 gccaaatcgtgagagtagagggcggtctcagcatcatcagccctgagtggcagcaagaagatgaagaatacgaaagaagtcacgaggaggaagaagatga 32243038  T
Q  201 agggagatcaagacaccttcttagac 226  Q
    | ||||| |||||||| ||| |||||    
T  32243037 acggagaccaagacacattcgtagac 32243012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32248975 - 32248750
Alignment:
Q  1 agcagcgtgctgagtggtttcagctcagagtttttagcgcaggctctcaacacggatcaggatacagctaagagactacaatccccacgcgaccagagga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32248975 agcagtgtgctgagtggtttcagctcagagtttttagcgcaggcactcaacacggatcaggatacagctaagagacttcaatctccacgcgaccagagga 32248876  T
Q  101 gccaaatcgtgagagtagagggcggtctcagcatcatcagtcctgagtggcagcaagaagatgaagaatatgaaagaagtcccgaggaggaagaagatga 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  32248875 gccaaatcgtgagagtagagggcggtctcagcatcatcagccctgagtggcagcaagaagatgaagaatacgaaagaagtcacgaggaggaagaagatga 32248776  T
Q  201 agggagatcaagacaccttcttagac 226  Q
    | ||||| |||||||| ||| |||||    
T  32248775 acggagaccaagacacattcgtagac 32248750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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