View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_high_27 (Length: 229)
Name: NF19197_high_27
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_high_27 |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 13237 - 13424
Alignment:
| Q |
17 |
aagaactccaatccttacaacaacnnnnnnnnnttatatcactaacctatcaaatgttagagatgagcctatacacactactccnnnnnnncacactgaa |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
13237 |
aagaactccaatccttacaacaacaaaaaaaa-ttatatcactaacctatcaaatgttagagatgagcctatatacactactccaaaaaaacacattgaa |
13335 |
T |
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| Q |
117 |
atcagctattcctacaaccgatttaaaagagagtattttaatccgcatacttaaacttaaggaatttaaagatatataatatattcttt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13336 |
atcagctattcctacaaccgatttaaaagagagtattttaatccgcatatttaaacttaaggaatttaaagatatataatatattcttt |
13424 |
T |
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Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 6511558 - 6511745
Alignment:
| Q |
17 |
aagaactccaatccttacaacaacnnnnnnnnnttatatcactaacctatcaaatgttagagatgagcctatacacactactccnnnnnnncacactgaa |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
6511558 |
aagaactccaatccttacaacaacaaaaaaaa-ttatatcactaacctatcaaatgttagagatgagcctatatacactactccaaaaaaacacattgaa |
6511656 |
T |
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| Q |
117 |
atcagctattcctacaaccgatttaaaagagagtattttaatccgcatacttaaacttaaggaatttaaagatatataatatattcttt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6511657 |
atcagctattcctacaaccgatttaaaagagagtattttaatccgcatatttaaacttaaggaatttaaagatatataatatattcttt |
6511745 |
T |
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