View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_high_3 (Length: 531)
Name: NF19197_high_3
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Complemental strand, 51579938 - 51579435
Alignment:
| Q |
12 |
agaagaaactagttctaattaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
111 |
Q |
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| T |
51579938 |
agaagaaactagttctaattaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
51579839 |
T |
|
| Q |
112 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
211 |
Q |
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| T |
51579838 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
51579739 |
T |
|
| Q |
212 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
311 |
Q |
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| T |
51579738 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
51579639 |
T |
|
| Q |
312 |
ctgtgttggacaacttggaaagaagtttctaaaatattacaatcatactctcggggaggcaaatcacggagctaacacgggtgcaaaggagggttgaaaa |
411 |
Q |
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| T |
51579638 |
ctgtgttggacaacttggaaagaagtttgtaaaatattacaatcatactctcggggaggcaaatcacggagctaacac-ggtgcaaaggagggttgaaaa |
51579540 |
T |
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| Q |
412 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
511 |
Q |
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| T |
51579539 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
51579440 |
T |
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| Q |
512 |
tttat |
516 |
Q |
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| T |
51579439 |
tttat |
51579435 |
T |
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