View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19197_high_9 (Length: 381)

Name: NF19197_high_9
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19197_high_9
NF19197_high_9
[»] chr3 (1 HSPs)
chr3 (10-364)||(12136397-12136753)
[»] chr4 (4 HSPs)
chr4 (49-182)||(105234-105367)
chr4 (67-181)||(165876-165990)
chr4 (284-364)||(105075-105155)
chr4 (270-364)||(165705-165799)
[»] scaffold0013 (2 HSPs)
scaffold0013 (270-364)||(91609-91703)
scaffold0013 (67-182)||(91405-91520)
[»] chr8 (7 HSPs)
chr8 (67-183)||(5720994-5721110)
chr8 (67-183)||(5688262-5688378)
chr8 (283-358)||(5688466-5688541)
chr8 (67-181)||(5668475-5668588)
chr8 (68-181)||(5653926-5654039)
chr8 (283-358)||(5721204-5721279)
chr8 (278-358)||(5668671-5668751)
[»] chr7 (2 HSPs)
chr7 (69-182)||(13053748-13053861)
chr7 (276-364)||(13053588-13053676)
[»] chr6 (2 HSPs)
chr6 (279-335)||(33341212-33341268)
chr6 (279-335)||(35124828-35124884)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 12136397 - 12136753
Alignment:
Q  10 aacaatatcaaaattaactaatctttcaatgaaacataaatggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatata 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136397 aacaaaatcaaaattaactaatctttcaatgaaacataaatggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatata 12136496  T
Q  110 acctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagtaggcaacactgaaacacaa--gaatttaaccgaggttgacttca 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||    
T  12136497 acctttctggttccatcttttcccctacaatctttggaggcaacactgataaaagtaggcaacactgaaacacaaaagaatttaaccgaggttgactgca 12136596  T
Q  208 tgacctattttgttttgatcggttaagtttattactaacaacttagattgttcacttcatgacctattttgttaattaccttcaaaccttctgcagtaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136597 tgacctattttgttttgatcggttaagtttattactaacaacttagattgttcacttcatgacctattttgttaattaccttcaaaccttctgcagtaca 12136696  T
Q  308 atcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136697 atcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 12136753  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 105367 - 105234
Alignment:
Q  49 atggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggag 148  Q
    |||| |||||||||| | | |||||||||||| ||||| | || ||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  105367 atggcaataaatttaatagcacttgcctgaagcgacaacaagacattgaccgaatcatataacctttctggttccatcttttcccccacaatctctggag 105268  T
Q  149 gcaacactgataaaagtaggcaacactgaaacac 182  Q
    |||||| |||||||||||| ||||||||||||||    
T  105267 gcaacattgataaaagtagacaacactgaaacac 105234  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 165990 - 165876
Alignment:
Q  67 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 166  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||    
T  165990 gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta 165891  T
Q  167 ggcaacactgaaaca 181  Q
    | |||||||| ||||    
T  165890 gacaacactggaaca 165876  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 105155 - 105075
Alignment:
Q  284 taccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 364  Q
    ||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  105155 taccttcaaaccttcagcggtgcaatcagaaacttgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 105075  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 165799 - 165705
Alignment:
Q  270 cctattttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 364  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||  |||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  165799 cctatgttgttaattaccttcaatccttctgcggtgcaatcagaaagttgccatccttggtcttgatcagagaaggtccacgagcctttagaaat 165705  T

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Target: scaffold0013 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 91609 - 91703
Alignment:
Q  270 cctattttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 364  Q
    ||||| |||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  91609 cctatgttgttagttaccttcaaaccttctgcggtactatcagaaacttgccatccatggtcttgatcggagaaggtccatgaacctttagaaat 91703  T

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Target: scaffold0013; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 91405 - 91520
Alignment:
Q  67 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 166  Q
    |||| ||||||||| ||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| ||| |   |||||| |||| |||||| ||||    
T  91405 gtacatgcctgaagtgacaacaggagattgactgaatcatataacctttccggttccatcttttcccccacagttgctggaggaaacattgataatagta 91504  T
Q  167 ggcaacactgaaacac 182  Q
      ||||||||||||||    
T  91505 aacaacactgaaacac 91520  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 5720994 - 5721110
Alignment:
Q  67 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 166  Q
    ||||||||||||||||| || | |||||| |||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||| ||||||||| |    
T  5720994 gtacttgcctgaagagaaaacaagatattgactgaatcatataacctttcaggttccattttttcccccacaatctctggaggcaacattgataaaagca 5721093  T
Q  167 ggcaacactgaaacaca 183  Q
    | ||||||| |||||||    
T  5721094 gacaacactaaaacaca 5721110  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 5688262 - 5688378
Alignment:
Q  67 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 166  Q
    ||||||||||||||||| || | |||||| || ||||||||||||||||| |||||||| |||||||| |||||||  |||| ||||| ||||||||| |    
T  5688262 gtacttgcctgaagagaaaacatgatattgacggaatcatataacctttcaggttccattttttcccctacaatctccggagacaacattgataaaagca 5688361  T
Q  167 ggcaacactgaaacaca 183  Q
    | ||||||| |||||||    
T  5688362 gacaacactaaaacaca 5688378  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 5688466 - 5688541
Alignment:
Q  283 ttaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagccttt 358  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  5688466 ttacctttaaaccttctgcagtgcaatcagaaacctgccatccatgatcttgatcagagaaggtccatgacccttt 5688541  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 5668475 - 5668588
Alignment:
Q  67 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 166  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||| |||||||  ||||||| ||  |||||||| |    
T  5668475 gtacttgcctgaagagaaaataggatattgaccgcatcatataacctttcaggttccatcttttcccc-acaatctccggaggcagcatcgataaaagca 5668573  T
Q  167 ggcaacactgaaaca 181  Q
    | ||||||| |||||    
T  5668574 gacaacactaaaaca 5668588  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 5653926 - 5654039
Alignment:
Q  68 tacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagtag 167  Q
    ||||| ||||||| ||||| |  | ||| ||||||||||||| |||||| ||||| | | ||||||| ||||||||||||||||||| ||| ||||||||    
T  5653926 tactttcctgaagtgacaacacaaaattgactgaatcatatagcctttcgggttcaaccatttcccccacaatctttggaggcaacattgacaaaagtag 5654025  T
Q  168 gcaacactgaaaca 181  Q
     |||||||||||||    
T  5654026 acaacactgaaaca 5654039  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 5721204 - 5721279
Alignment:
Q  283 ttaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagccttt 358  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  5721204 ttacctttaaaccttctgcggtgcaatcagaaacctgccatccatgatcttgatcagagaatgtccatgacccttt 5721279  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 5668671 - 5668751
Alignment:
Q  278 gttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagccttt 358  Q
    |||| ||||||| |||||||||||||| ||||| |||||   ||||||||| |||||||| |||||||||||||| |||||    
T  5668671 gttagttacctttaaaccttctgcagtgcaatctgaaactgaccatccatgatcttgatcagagaaggtccatgacccttt 5668751  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 13053861 - 13053748
Alignment:
Q  69 acttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagtagg 168  Q
    |||| ||||||| ||||| || | ||| ||||||||||||||||| ||||||||||| ||||| || |||||||  |||||||||| ||||||||||||     
T  13053861 acttacctgaagtgacaacagaagattgactgaatcatataacctctctggttccatattttcacccacaatctcaggaggcaacattgataaaagtaga 13053762  T
Q  169 caacactgaaacac 182  Q
    ||||||||||||||    
T  13053761 caacactgaaacac 13053748  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 13053676 - 13053588
Alignment:
Q  276 ttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaat 364  Q
    |||||| ||||||||| ||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |  |||||||||||    
T  13053676 ttgttatttaccttcagaccatctgcggtgcaatcagaaacttgccatccatggtcttgatcggagaaagtccacgcacctttagaaat 13053588  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 33341268 - 33341212
Alignment:
Q  279 ttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttga 335  Q
    ||||| |||||||| ||||||||||| |||||||||||  |||| |||| |||||||    
T  33341268 ttaatgaccttcaagccttctgcagtgcaatcagaaacaggccaaccattgtcttga 33341212  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 35124828 - 35124884
Alignment:
Q  279 ttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttga 335  Q
    ||||| |||||||| ||||||||||| |||||||||||  |||| |||| |||||||    
T  35124828 ttaatgaccttcaagccttctgcagtgcaatcagaaacaggccaaccattgtcttga 35124884  T

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