View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_10 (Length: 373)
Name: NF19197_low_10
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 34375926 - 34376271
Alignment:
| Q |
17 |
actttcgtaattgagaaatacataaatgcatgtttcacaggtggcatcacaaggatcgaagatgttgagctggaccatgttgcataatgaaggatacttt |
116 |
Q |
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| T |
34375926 |
actttcgtaattgagaaatacataaatgcatgtttcacaggtggcatcacaaggatcgaagatgttgagctggaccatgttgcataatgaaggatacttt |
34376025 |
T |
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| Q |
117 |
atcaaaaactcaaaaataagtatcaaagaatgtcatgaactgccatatcttgttccttacaataaaatacaaatgcttcaacatgtggaggaactcactg |
216 |
Q |
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| T |
34376026 |
atcaaaaactcaaaaataagtatcaaagaatgtcatgaactgccatatcttgttccttacaataaaatacaaatgcttcaacatgtggaggaactcactg |
34376125 |
T |
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| Q |
217 |
caggttattgtgattcactagttgaggtgattgaatcaggaggaggaaaaggtacaagaaaaggggatgtcaacacacattatcaattaaaaaatttgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376126 |
caggttattgtgattcactagttgaggtgattgaatcaggaggaggaaaaggtacaagaaaaggggatgtcaacacacattatcaattaaaaaatttgac |
34376225 |
T |
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| Q |
317 |
attgcagcagttgccaaaattgattcacatatggaaacatgatatt |
362 |
Q |
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| T |
34376226 |
attgcagcagttgccaaaattgattcacatatggaaacatgatatt |
34376271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 34288685 - 34288574
Alignment:
| Q |
47 |
tgtttcacaggtggcatcacaaggatcgaagatgttgagctggaccatgttgcataatgaaggatactttatcaaaaactc-aaaaataagtatcaaaga |
145 |
Q |
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| T |
34288685 |
tgttttacaggtggcatcacaaggattggagatgttgaattggaccaaacaacataacgagggatacttcatagaaaactcaaaaaataaatatcaaaga |
34288586 |
T |
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| Q |
146 |
atgtcatgaact |
157 |
Q |
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| T |
34288585 |
atttcataaact |
34288574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 34563017 - 34562939
Alignment:
| Q |
183 |
atacaaatgcttcaacatgtggaggaactcactgcaggttattgtgattcactagttgaggtgattgaatcaggaggag |
261 |
Q |
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|||||||| |||||||||||| |||||||| |||| || | ||||||||| | ||||||||| ||| ||||| ||||| |
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| T |
34563017 |
atacaaatacttcaacatgtgagggaactcaatgcaagtgactgtgattcattggttgaggtgtttggatcagtaggag |
34562939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 15892147 - 15892049
Alignment:
| Q |
165 |
cttgttccttacaataaaatacaaatgcttcaacatgtggaggaactcactgcaggttattgtgattcactagttgaggtgattgaatcaggaggagga |
263 |
Q |
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| T |
15892147 |
cttgtgccgtacaatgagatacaaatgcttcaaaatgtgaaggaactgaccgtaagtaattgtgattcactaaatgaggtgtttggatcaggaggagga |
15892049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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