View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_12 (Length: 323)
Name: NF19197_low_12
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 24020787 - 24020473
Alignment:
| Q |
11 |
cagagacgaaacagtacacaaagtcattagaaacacgggatcataccttgagtgatgatc--------------------ataacacgggttcacgttga |
90 |
Q |
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| T |
24020787 |
cagaaacgaaacagtacacaaagtcattagaaacaccggatcgtaccttgagtgatgatcataatagagggatatccatcataacacgggttcacgtaga |
24020688 |
T |
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| Q |
91 |
attattgattgacacagctcagtgaatggaaatcagctataagacaatgaaaaaccctaacttatgattgcagcaaattctttgcttgatgttataactc |
190 |
Q |
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| T |
24020687 |
aatattgattgacacagctcagtgaatgaaaatcagctatgcgacaatgaaaaaccctaacttatgattgcagcaaattcattgcttgatattataactc |
24020588 |
T |
|
| Q |
191 |
tcttgtaaatgagcaaattctccctctcgataatcaattcatttgtttttgattagaatgaatttcaggttaactgttccagtgaatgcaatattcaaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24020587 |
tcttgtaaatgagcaaattctccctctcgataatcaattcatttgtttttgattagaatgaatttcaggttaactgttccagtgaatgcaatattcaaca |
24020488 |
T |
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| Q |
291 |
aagatcaacattggt |
305 |
Q |
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| T |
24020487 |
aagatcaacattggt |
24020473 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 11563509 - 11563413
Alignment:
| Q |
208 |
ttctccctctcgataatcaattcatttgtttttgattagaatgaatttcaggttaactgttccagtgaatgcaatattcaacaaagatcaacattggt |
305 |
Q |
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| T |
11563509 |
ttctccctctcaataatcgattcacttgtctctgattcaaatgaattctaggctaattgtttc-gtgaatgcaatattcaacaaagattgacattggt |
11563413 |
T |
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