View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_15 (Length: 300)
Name: NF19197_low_15
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 42467765 - 42467492
Alignment:
| Q |
20 |
ctctaaggttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatcaggcttgcatgtgacaaatcaaattgtatttagcagaaa |
119 |
Q |
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| T |
42467765 |
ctctaaagttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatctggcttgcatgtgacaaatcaaattgtatttagcagaaa |
42467666 |
T |
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| Q |
120 |
taaggaattaatcctaattatgacgagtagcaaaagttatgcttatctnnnnnnntcttcactgttcatctatggttattgaataatgaataaacnnnnn |
219 |
Q |
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| T |
42467665 |
tgaggaattaatcctaattatgacgagtagcaaaagttatgcttatctaaaaaaatcttcattgttcatctatggttattgaataatgaataaacaaaaa |
42467566 |
T |
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| Q |
220 |
nnttgaaatatggggctagacctggaaaaaaccataggagctgcatgcttcaccaatttgctgcacaatctgtg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42467565 |
aattgaaatatggggctagacctggaaaaaaccataggagctgcatgcttcaccaatttgctgcacaatctgtg |
42467492 |
T |
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