View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_16 (Length: 300)
Name: NF19197_low_16
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 298
Target Start/End: Complemental strand, 906769 - 906575
Alignment:
| Q |
98 |
aagatgagactcgttttggaaggggtaagggtgtagaaggcaatcaccacttccaaattaacatttcaaaagaaaaattcacaaaacttgcaaaaatttc |
197 |
Q |
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| T |
906769 |
aagatgagactcgttttggaaggggtaagggtgtagata--aattaacatttcaaaagaaaaattacaaaa----aattcacaaaacttgcaaaaatttc |
906676 |
T |
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| Q |
198 |
accaatattctgttaagcacatactgactggaagtgcttgacatagttgtnnnnnnntggaagtaaatagtggtaaaatcagcctgctttacaaaatgga |
297 |
Q |
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| T |
906675 |
accaatattctgttaagcacatactgactggaagtgcttgacatagttgtaaaaaaatggaaataaatagtggtaaaatcagcctgctttacaaaatgga |
906576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 906892 - 906791
Alignment:
| Q |
13 |
aatattaaagataaagtttaaaccgaaaatgatatggcaaaagttctcgagttcccaacactcactcttttattatacaaatttgaagatgagactcgtt |
112 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
906892 |
aatattaaagataaagtttaaactgaaaatgatattgcaaaagttctcgagttcccaacactcactcttttattatacaaatttgaagatgagactagtt |
906793 |
T |
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| Q |
113 |
tt |
114 |
Q |
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| T |
906792 |
tt |
906791 |
T |
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