View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_17 (Length: 295)
Name: NF19197_low_17
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 36756511 - 36756226
Alignment:
| Q |
1 |
aacttgttatagaggaaagaaaaacagaaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatataacttgc |
100 |
Q |
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| T |
36756511 |
aacttgttatagaggaaagaaaaacataaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatacaacttgc |
36756412 |
T |
|
| Q |
101 |
attaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
36756411 |
attacggcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgattat |
36756312 |
T |
|
| Q |
201 |
cttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
36756311 |
cttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatcccattcatct |
36756226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 36749124 - 36748931
Alignment:
| Q |
62 |
catcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaa |
161 |
Q |
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| T |
36749124 |
catcaaggtttaagtcttcatgcaaaaaatataacttgatttaccgcgttatcaaatccagctttgtactgcaatgagttttgatattttaattcttcaa |
36749025 |
T |
|
| Q |
162 |
tttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgtt |
255 |
Q |
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| T |
36749024 |
tttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgacattactcttggaactttctacgtttaatacgtt |
36748931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 36755938 - 36755839
Alignment:
| Q |
187 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
286 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 21138790 - 21138672
Alignment:
| Q |
64 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
163 |
Q |
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|||||||||||||| ||||| ||| ||| ||||||| | ||||| ||| || | || ||||||||||||| ||| |||| || |||| |||||||||| |
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| T |
21138790 |
tcaaggtttaagtcctgatgcaaaaaatacaacttgcttcaccgccttatcataaccggctttgtactgcactgacattttatacttcagttcttcaatt |
21138691 |
T |
|
| Q |
164 |
tcagctttcaacctgtcaa |
182 |
Q |
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||||| |||||| |||||| |
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| T |
21138690 |
tcagccttcaacttgtcaa |
21138672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 36772068 - 36772014
Alignment:
| Q |
119 |
ccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
173 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |
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| T |
36772068 |
ccagctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 36772210 - 36772170
Alignment:
| Q |
36 |
atgttagtttcaaggagaatccaaaacatcaaggtttaagt |
76 |
Q |
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| T |
36772210 |
atgttagtttcaagaagaatccaaaacatcaaggttcaagt |
36772170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 36767406 - 36767357
Alignment:
| Q |
237 |
tttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
286 |
Q |
| |
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|||| ||||||||||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
36767406 |
tttccacgcttaattcgtccaaagatttctttaaattatcccgttcatct |
36767357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 23432613 - 23432724
Alignment:
| Q |
64 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
163 |
Q |
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|||||||||||| | ||||| ||| ||| ||||||| ||||||| || || | || ||||||||||| |||||||||| | |||||||| |||||| |
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| T |
23432613 |
tcaaggtttaagccctgatgcaaaatatacaacttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatt |
23432712 |
T |
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| Q |
164 |
tcagctttcaac |
175 |
Q |
| |
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||||| |||||| |
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| T |
23432713 |
tcagccttcaac |
23432724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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