View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_2 (Length: 562)
Name: NF19197_low_2
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 209 - 547
Target Start/End: Complemental strand, 15678875 - 15678537
Alignment:
| Q |
209 |
tataatattaattaataaattaaaccatgtgtttattttgatgcttaacacatgcatgtattaagaacatttaaagcatgaattaaactcaaacggattc |
308 |
Q |
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| T |
15678875 |
tataatattaattaataaattaaaccacgtgtttattttgatgcttatcacatgcatgaattaagaacatttaaagtatgaattaaactcaaacggattc |
15678776 |
T |
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| Q |
309 |
tcagaatttattttaacggaaaagaaggattgttgtgagaatggaagatttaagaa--aaaatatgttaggttaaacacaaatatggaaagaattaagaa |
406 |
Q |
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| T |
15678775 |
tcagaatttattttaacggaaaagaaggattgttgtgagaatggaagatttaagaaaaaaaatatgctaggttaaacacaaatatggaaagaattaagaa |
15678676 |
T |
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| Q |
407 |
agagaattggataaaaaatacttaaaatcaatgcttagaaagagtataattattaggtcagtaaactaaattagatagtatttagcaatttctggaattt |
506 |
Q |
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| T |
15678675 |
agagaactgg--aaaaaaaaattaaaatcaatgcttagaaagagtataattattaggtcagtaaactaaattagatagtatttagcaatttgtggaattt |
15678578 |
T |
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| Q |
507 |
acctcaagaagcactcttagaacagaataaaatgctgataa |
547 |
Q |
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| T |
15678577 |
acctcaagaagcactcttagaacagaataaaatgctgataa |
15678537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 15679121 - 15678938
Alignment:
| Q |
20 |
acaaaacagtgatctcagtaatatacatcaagaacttgtgtaaaagaataggaagaaaaggaaacgagtccttcaagaaaaagattttgaaaactctaca |
119 |
Q |
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| T |
15679121 |
acaaaacagtgatctcagtaatatacatcaagaacttgtgtaaaagaataggaagaaaaggaaaagagtccttcaagaaaaagattttgaaaactct--- |
15679025 |
T |
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| Q |
120 |
acttacaagcaataaaaacatacgtataacataacaaatttatagatatgattggaagaaaaaagccaaaactgcaaacgaaggagcagta |
210 |
Q |
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| T |
15679024 |
----acaagcaataagaacatacgtataacataacaaatttatagatatgattggaagaaaaaagccaaaactgcaaacgaaggagcagta |
15678938 |
T |
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