View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_23 (Length: 239)
Name: NF19197_low_23
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 33707139 - 33707351
Alignment:
| Q |
17 |
actaatgccaataaatgtaaatgttgttcataaaagataaatcaaatgaaaaatccatgaacatcaatctaagaattcattgtatatccgct--tagaag |
114 |
Q |
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| T |
33707139 |
actaatgccaataaatgtaaatgttgttcataaaagataaatc------------catgaacatcaatctaagaattcattgtatatccgctcttaaaag |
33707226 |
T |
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| Q |
115 |
agtccttagatcatatgtacatcaatcaagttgtcttaacacagttaccttgatatcttcttaagacaagataattagaacaatctctctctgattttat |
214 |
Q |
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| T |
33707227 |
agtccttagatcataggtacatcaatcaagttgtcttaacacagttaccttgatatcttcttaagacaagataattagaacaatctctctctgactttat |
33707326 |
T |
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| Q |
215 |
atcactcaaatacaaactcaatctc |
239 |
Q |
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| T |
33707327 |
atcactcaaatacaaactcaatctc |
33707351 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 32361563 - 32361626
Alignment:
| Q |
39 |
gttgttcataaaagataaatcaaatgaaaaatccatgaacatcaatctaagaattcattgtatat |
103 |
Q |
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| T |
32361563 |
gttgtccatacaagataaatcaaa-gaaaaatccctcaacatgaatctaggaattgattgtatat |
32361626 |
T |
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