View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19197_low_28 (Length: 227)
Name: NF19197_low_28
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_28 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 2398970 - 2399183
Alignment:
| Q |
22 |
aaagatgccagtacgactttaaattgaatttcttttttcctatttatatgccctatcttataatctaagataaggaaaaccctctatttcgttaaact-- |
119 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2398970 |
aaagatgtcggtacgactttaaattgaatttcttttttcctatttatatgccctatcttataatctaagattgggaaaaccctctatttcgttagactca |
2399069 |
T |
|
| Q |
120 |
-----gtctaatgatccattaaacctgccacttctttgtatgagggacaagtaggagaatgtatgcttgaagcgaatgaattattgaaaatgcg-aaaaa |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
2399070 |
gatctgtctaatgatccattaaacctaccacttctttgtatgagggacaagcaggagaatgtatgcttgaagcgaatgaattactgaaaatgcgaaaaaa |
2399169 |
T |
|
| Q |
214 |
actatatcaaatat |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2399170 |
actatatcaaatat |
2399183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 18332407 - 18332318
Alignment:
| Q |
123 |
taatgatccattaaacctgccacttctttgtatgagggacaagtaggagaatgtatgcttgaagcgaatgaattattgaaaatgcgaaaaa |
213 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||| |
|
|
| T |
18332407 |
taatgatccatcaa-cctgctacttctttgtatgagggacaagtaggagaatgtatgctggaagcggaggaattactgaaaatgcgaaaaa |
18332318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 29800350 - 29800261
Alignment:
| Q |
123 |
taatgatccattaaacctgccacttctttgtatgagggacaagtaggagaatgtatgcttgaagcgaatgaattattgaaaatgcgaaaaa |
213 |
Q |
| |
|
||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||| |
|
|
| T |
29800350 |
taatgatccatcaa-cttgctacttctttgtatgagggacaagtaggagaatgtatgctggaagcggaggaattactgaaaatgcgaaaaa |
29800261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 18332512 - 18332462
Alignment:
| Q |
9 |
tatgctatataaaaaagatgccagtacgactttaaattgaatttctttttt |
59 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
18332512 |
tatgctatataaaagagatgcctgtacggctttaaattgaatttctttttt |
18332462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 29800456 - 29800406
Alignment:
| Q |
9 |
tatgctatataaaaaagatgccagtacgactttaaattgaatttctttttt |
59 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
29800456 |
tatgctatataaaagagatgcctgtacggctttaaattgaatttctttttt |
29800406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 7958979 - 7958891
Alignment:
| Q |
136 |
aacctgccacttctttgtatgagggacaagtaggagaatgtatgcttgaagcgaatgaattattgaaaatgcgaaaaaactatatcaaatat |
227 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| |||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
7958979 |
aacctgctacttctttgtatgagggacaag---gagattgtatgctggaagcaaatgaattactgaaaatgcgaaaaaactatgacaaatat |
7958891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 7959077 - 7959025
Alignment:
| Q |
48 |
aatttcttttttcctatttatatgccctatcttataatctaagataaggaaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||| ||||| ||||||| |
|
|
| T |
7959077 |
aatttcttttttcttatttatatgccttaccttataatccaagattaggaaaa |
7959025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University