View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19197_low_4 (Length: 496)
Name: NF19197_low_4
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_4 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Original strand, 32687573 - 32688040
Alignment:
| Q |
13 |
aatatatactaaacaataaaaataaaggataacttagtcaaattannnnnnncgaacaaaatcatataaaaataattctcttttatcccattaacacgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687573 |
aatatatactaaacaataaaaataaaggataacttagtcaaattatttttttcgaacaaaatcatataaaaataattctcttttatcccattaacacgtt |
32687672 |
T |
|
| Q |
113 |
aattctggaaataaatactaacttttttactaataactctataaaaattctcttgtatcccataaacgctaacnnnnnnnaacaacgctcatgaaagcta |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32687673 |
aaatctggaaataaatactaacttttttactaataactctataaaaattcttttgtatcccataaacgctaactttttttaacaacgctcatgaaagcta |
32687772 |
T |
|
| Q |
213 |
acgtacaacaataatgactcaggtccactctttgacaaaataaggggtagaaatgaaaatgatataatatttgtttcaataacatttgatgaaaatgata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687773 |
acgtacaacaataatgactcaggtccactctttgacaaaataaggggtagaaatgaaaatgatataatatttgtttcaataacatttgatgaaaatgata |
32687872 |
T |
|
| Q |
313 |
aagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagagtatggatagttttagttcaattttagtgtagaaaaacaaattgaaattt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
32687873 |
aagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagagtatggataggtttagttcaatttttgtgt----aaaaaaattgaaattt |
32687968 |
T |
|
| Q |
413 |
gaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttattttgattccaaagttaaactt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32687969 |
gaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttattttgattccaaaattaaactt |
32688040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 37638 - 37700
Alignment:
| Q |
265 |
atgaaaatgatataatatttgtttcaataacatttgatgaaaatgataaagaaaataaaacag |
327 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
37638 |
atgaaaacgatataatttttgtttcaataacatttgctgaaaattatgaagaaaataaaacag |
37700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University