View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_5 (Length: 496)
Name: NF19197_low_5
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 155 - 483
Target Start/End: Original strand, 443394 - 443724
Alignment:
| Q |
155 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
254 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
443493 |
T |
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| Q |
255 |
ag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
352 |
Q |
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| T |
443494 |
agaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
443593 |
T |
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| Q |
353 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
452 |
Q |
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| T |
443594 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
443693 |
T |
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| Q |
453 |
atagaaattgatgattcagacagtgatgatg |
483 |
Q |
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| T |
443694 |
atagaaattgatgattcagacagtgatgatg |
443724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 443292 - 443400
Alignment:
| Q |
18 |
actcatatcatatataacaatccctaaatttattattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattc |
117 |
Q |
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| T |
443292 |
actcatatcatatataacaatccctaaatttatcattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattc |
443391 |
T |
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| Q |
118 |
agggactaa |
126 |
Q |
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| T |
443392 |
agggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
216 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
301 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
216 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
298 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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