View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19197_low_6 (Length: 454)
Name: NF19197_low_6
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 114 - 439
Target Start/End: Original strand, 6602205 - 6602524
Alignment:
| Q |
114 |
caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaag |
213 |
Q |
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| T |
6602205 |
caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaag |
6602304 |
T |
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| Q |
214 |
atattgtctttaacaattttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaa |
313 |
Q |
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| T |
6602305 |
atattgtctttaacaattttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaa |
6602404 |
T |
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| Q |
314 |
acatgaaaacaaaaacatgtttgttatagacacactccatgagttgaaactatatatgttgacaaaattaattagaactttgtgtgacaatataagttgt |
413 |
Q |
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| T |
6602405 |
acatgaaaataaaaacatgtttgttagagacacactccatgagctgaaac----tatgttgacaaacttaattagaactttgtgtgaca--ataagttgt |
6602498 |
T |
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| Q |
414 |
aagatgaaacaatttatagaaggaaa |
439 |
Q |
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| T |
6602499 |
aagctgaaacaatttatagaaggaaa |
6602524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 129 - 366
Target Start/End: Original strand, 6609735 - 6609972
Alignment:
| Q |
129 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca |
228 |
Q |
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| T |
6609735 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca |
6609834 |
T |
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| Q |
229 |
attttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaa |
328 |
Q |
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| T |
6609835 |
attctgttcaggtttggacaagttctaatgtagaagttgtaatagagttgagagcacacatttggagtaagaaacacaagacaaaacatgaaaacaaaaa |
6609934 |
T |
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| Q |
329 |
catgtttgttatagacacactccatgagttgaaactat |
366 |
Q |
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| T |
6609935 |
catgtttgttagagacacactccatgagttgaaactat |
6609972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 6602100 - 6602130
Alignment:
| Q |
9 |
agcacagatccatcacatccctatgtaacac |
39 |
Q |
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| T |
6602100 |
agcacagatccatcacatccctatgtaacac |
6602130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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