View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19197_low_7 (Length: 439)
Name: NF19197_low_7
Description: NF19197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19197_low_7 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 32687624 - 32688040
Alignment:
| Q |
7 |
tcgaagaatatcatataaaaataattctcttttatcccattaacacgttaattctggaaataaatactaacttttttactaataactctataaaaattct |
106 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687624 |
tcgaacaaaatcatataaaaataattctcttttatcccattaacacgttaaatctggaaataaatactaacttttttactaataactctataaaaattct |
32687723 |
T |
|
| Q |
107 |
cttgtatcccataaacgctaacnnnnnnnaacaacgctcatgaaagctaacgtacaacaataatgactcaggtccactctttgacaaaataaggggtaga |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687724 |
tttgtatcccataaacgctaactttttttaacaacgctcatgaaagctaacgtacaacaataatgactcaggtccactctttgacaaaataaggggtaga |
32687823 |
T |
|
| Q |
207 |
aatgaaaatgatataatatttgtttcaataacatttgatgaaaatgataaagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687824 |
aatgaaaatgatataatatttgtttcaataacatttgatgaaaatgataaagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagag |
32687923 |
T |
|
| Q |
307 |
tatggatagttttagttcaattttagtgtagaaaaacaaattgaaatttgaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttat |
406 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32687924 |
tatggataggtttagttcaatttttgtgt----aaaaaaattgaaatttgaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttat |
32688019 |
T |
|
| Q |
407 |
tttgattccaaagttaaactt |
427 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
32688020 |
tttgattccaaaattaaactt |
32688040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37638 - 37700
Alignment:
| Q |
208 |
atgaaaatgatataatatttgtttcaataacatttgatgaaaatgataaagaaaataaaacag |
270 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
37638 |
atgaaaacgatataatttttgtttcaataacatttgctgaaaattatgaagaaaataaaacag |
37700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University