View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19198_high_1 (Length: 913)

Name: NF19198_high_1
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19198_high_1
NF19198_high_1
[»] chr3 (19 HSPs)
chr3 (289-897)||(52952519-52953126)
chr3 (665-897)||(31904400-31904628)
chr3 (1-186)||(52952232-52952417)
chr3 (581-851)||(31673322-31673577)
chr3 (581-851)||(31922097-31922352)
chr3 (1-186)||(31923011-31923195)
chr3 (1-186)||(31672442-31672626)
chr3 (1-186)||(31905083-31905267)
chr3 (485-595)||(31673080-31673190)
chr3 (493-595)||(31922485-31922587)
chr3 (591-643)||(31904633-31904686)
chr3 (298-401)||(40272824-40272927)
chr3 (761-803)||(43071122-43071164)
chr3 (302-372)||(29106595-29106665)
chr3 (298-362)||(31904908-31904972)
chr3 (298-362)||(45948889-45948953)
chr3 (298-400)||(7943032-7943134)
chr3 (298-354)||(21875055-21875112)
chr3 (299-344)||(54374415-54374460)
[»] chr1 (6 HSPs)
chr1 (761-896)||(7759852-7759987)
chr1 (299-399)||(43207539-43207640)
chr1 (302-362)||(10163806-10163866)
chr1 (299-362)||(46248004-46248067)
chr1 (299-399)||(23768334-23768434)
chr1 (298-403)||(32632567-32632671)
[»] chr7 (6 HSPs)
chr7 (298-403)||(33871920-33872024)
chr7 (298-362)||(11617639-11617703)
chr7 (298-362)||(19426940-19427004)
chr7 (298-362)||(23419725-23419789)
chr7 (298-362)||(7879658-7879722)
chr7 (298-348)||(46354214-46354264)
[»] chr2 (5 HSPs)
chr2 (298-403)||(19977724-19977829)
chr2 (300-403)||(32781299-32781401)
chr2 (318-401)||(26684632-26684715)
chr2 (298-401)||(11514456-11514558)
chr2 (298-362)||(5450305-5450370)
[»] scaffold0057 (1 HSPs)
scaffold0057 (296-401)||(46849-46954)
[»] chr4 (8 HSPs)
chr4 (298-401)||(19027868-19027971)
chr4 (298-362)||(9987885-9987949)
chr4 (298-348)||(10660424-10660474)
chr4 (298-348)||(10874569-10874619)
chr4 (298-348)||(16408668-16408718)
chr4 (302-359)||(10379997-10380053)
chr4 (301-362)||(14983857-14983918)
chr4 (302-359)||(51865092-51865149)
[»] chr5 (4 HSPs)
chr5 (298-348)||(22187305-22187355)
chr5 (298-362)||(1405207-1405271)
chr5 (298-362)||(24448910-24448974)
chr5 (298-348)||(12006395-12006445)
[»] chr8 (7 HSPs)
chr8 (299-362)||(44530170-44530233)
chr8 (298-362)||(8897815-8897879)
chr8 (298-362)||(36720816-36720880)
chr8 (298-362)||(12625909-12625974)
chr8 (298-399)||(28817640-28817741)
chr8 (298-403)||(29877114-29877219)
chr8 (298-399)||(36918144-36918245)
[»] chr6 (6 HSPs)
chr6 (299-362)||(20400688-20400751)
chr6 (299-358)||(32728211-32728270)
chr6 (298-362)||(3815128-3815192)
chr6 (81-133)||(10565602-10565654)
chr6 (301-348)||(6024256-6024303)
chr6 (315-352)||(24751135-24751172)
[»] scaffold0049 (1 HSPs)
scaffold0049 (298-399)||(58997-59100)
[»] scaffold0187 (2 HSPs)
scaffold0187 (329-362)||(10101-10134)
scaffold0187 (329-362)||(20429-20462)


Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 289 - 897
Target Start/End: Original strand, 52952519 - 52953126
Alignment:
Q  289 gtaccactgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgaga 388  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| | | |||||||||    
T  52952519 gtaccacggttggaaacaacctcttatgtaaaaaatatgataagactgtgtacaatacaccaaatagtgggacctcttttcaaactctttatatacgaga 52952618  T
Q  389 gctttagtgcaccagttacccctgatatttaaaattgtactactattacaatagtaattcaaagtctattcaacnnnnnnnngcctcggnnnnnnngtgt 488  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||       ||||    
T  52952619 gctttagtgcaccggttaccc-tgatatttaaaattgtactactattacaatagtaattcaaagtctattcaacttttttttgcctcggaaaaaaagtgt 52952717  T
Q  489 agtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcactat 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52952718 agtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcgctat 52952817  T
Q  589 ggaatttcaatgtcttgaaaatgtggaaataacaacaagacaagtgaattcacaaaactcacgtgaaaacaatcaaaaaccgacaacaattaatgtttca 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52952818 ggaatttcaatgtcttgaaaatgtggaaataacaacaagacaagtgaattcacaaaactcacgtgataacaatcaaaaaccgacaacaattaatgtttca 52952917  T
Q  689 cttctcgcgatctttgtcacttgaaactcaatctttatgttcttcttcttctctttctcataag-nnnnnnnntgggttctgtttctttgaaaattggtg 787  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  52952918 cttctcgtgatctttgtcacttgaaactcaat-tttatgttcttcttcttctctttctcataagaaaaaaaaatgggttctgtttctttgaaaattggtg 52953016  T
Q  788 atggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttatcacaaccaatctttttgctctttatgc 887  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52953017 atggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttatcacaaccaatctttttgctctttatgc 52953116  T
Q  888 tttcacttct 897  Q
    ||||||||||    
T  52953117 tttcacttct 52953126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 665 - 897
Target Start/End: Complemental strand, 31904628 - 31904400
Alignment:
Q  665 aaaccgacaacaattaatgtttcacttctcgcgatctttgtcacttgaaactcaatctttatgttcttcttcttctctttctcataagnnnnnnnntggg 764  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||         ||     
T  31904628 aaaccgacaacaattaatgtttcacttctcgtgatctttgtcacttgaaactcaatctttatgttcttcttcttctc---ctcataagaaaaaaaaagg- 31904533  T
Q  765 ttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttatcaca 864  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31904532 ttctgtttctttgaaaattggtgatggaacagcaagattcaaaaactcaacactttgttcttcagttgttaacattctcatgatcttatccgttatcaca 31904433  T
Q  865 accaatctttttgctctttatgctttcacttct 897  Q
    |||||||||||||||||||||||||||||||||    
T  31904432 accaatctttttgctctttatgctttcacttct 31904400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 52952232 - 52952417
Alignment:
Q  1 ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag 100  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52952232 ttagatcttgatagttttggctctttggtttcttaggttgcccaaacacacaagacaatatagcgtcaaaataatggagtatcaatcgaaatggtacaag 52952331  T
Q  101 aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 186  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52952332 aggaagagagtgaataatttatcgtcacatcattaaaatcacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 52952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 581 - 851
Target Start/End: Original strand, 31673322 - 31673577
Alignment:
Q  581 gtcactatggaatttcaatgtcttgaaaatgtggaaataacaacaagacaagtgaattcacaaaactcacgtgaaaacaatcaaaaaccgacaacaatta 680  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 || |||||||||||||||||    
T  31673322 gtcactatggaatttcaatgtcttgaaaatgtggaaataagaacaagacaagtgaattcacaa-----------------tccaaaaccgacaacaatta 31673404  T
Q  681 atgtttcacttctcgcgatctttgtcacttgaaactcaatctttatgttcttcttcttctctttctcataag--nnnnnnnntgggttctgtttctttga 778  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||    
T  31673405 atgtttcacttctcgtgatctttgtcacttgaaactcaatctttatgttcttcttcttctcttcctcataagaaaaaaaaaatgggttctgtttctttga 31673504  T
Q  779 aaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatctt 851  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  31673505 aaattggtgatggaacagcaagattcaaaaactcaacactttgttcttcagttgttaacattctcatgatctt 31673577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 581 - 851
Target Start/End: Complemental strand, 31922352 - 31922097
Alignment:
Q  581 gtcactatggaatttcaatgtcttgaaaatgtggaaataacaacaagacaagtgaattcacaaaactcacgtgaaaacaatcaaaaaccgacaacaatta 680  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 || |||||||||||||||||    
T  31922352 gtcactatggaatttcaatgtcttgaaaatgtggaaataagaacaagacaagtgaattcacaa-----------------tccaaaaccgacaacaatta 31922270  T
Q  681 atgtttcacttctcgcgatctttgtcacttgaaactcaatctttatgttcttcttcttctctttctcataag--nnnnnnnntgggttctgtttctttga 778  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           |||||||||||||||||    
T  31922269 atgtttcacttctcgtgatctttgtcacttgaaactcaatctttatgttcttcttcttctcttcctcataagaaaaaaaaaaagggttctgtttctttga 31922170  T
Q  779 aaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatctt 851  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  31922169 aaattggtgatggaacagcaagattcaaaaactcaacactctgttcttcagttgttaacattctcatgatctt 31922097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31923195 - 31923011
Alignment:
Q  1 ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag 100  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31923195 ttagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagtgtcaaaataatggagtatcaatcgaaatggtacaag 31923097  T
Q  101 aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 186  Q
    | || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31923096 aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31672442 - 31672626
Alignment:
Q  1 ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag 100  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  31672442 ttagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagcgtcaaaataatggagtatcaatcgaaatggtacaag 31672540  T
Q  101 aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 186  Q
    | || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31672541 aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31672626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31905267 - 31905083
Alignment:
Q  1 ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag 100  Q
    |||||||| ||||||||||||||||||| || ||||||||| ||| |||| |||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  31905267 ttagatctcgatagttttggctctttggtttcttaggttgctcaaccacataagaca-tatagcgtcaaaataatggagtatcaatcgaaatggtataag 31905169  T
Q  101 aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt 186  Q
    | || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31905168 aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt 31905083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 485 - 595
Target Start/End: Original strand, 31673080 - 31673190
Alignment:
Q  485 gtgtagtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtca 584  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||    
T  31673080 gtgtagtgaatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcacttggtgaactggaggcagagtca 31673179  T
Q  585 ctatggaattt 595  Q
    |||||||||||    
T  31673180 ctatggaattt 31673190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 493 - 595
Target Start/End: Complemental strand, 31922587 - 31922485
Alignment:
Q  493 aatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcactatggaa 592  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||    
T  31922587 aatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcactcggtgaactagaggcagagtcactacggaa 31922488  T
Q  593 ttt 595  Q
    |||    
T  31922487 ttt 31922485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 643
Target Start/End: Complemental strand, 31904686 - 31904633
Alignment:
Q  591 aatttcaatgtcttg-aaaatgtggaaataacaacaagacaagtgaattcacaa 643  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  31904686 aatttcaatgtcttggaaaatgtggaaataagaacaagacaagtgaattcacaa 31904633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 40272927 - 40272824
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    |||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  40272927 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 40272828  T
Q  398 cacc 401  Q
    ||||    
T  40272827 cacc 40272824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 803
Target Start/End: Original strand, 43071122 - 43071164
Alignment:
Q  761 tgggttctgtttctttgaaaattggtgatggaacagcaagatt 803  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  43071122 tgggttcagtttctttgaaaattggtgatggaacagcaagatt 43071164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 29106595 - 29106665
Alignment:
Q  302 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaa 372  Q
    |||||||||||| ||||||||||| ||||||  | |||||||||||| |||| |||||| | |||||||||    
T  29106595 aaacaacctcttgtgtaaaaaataggataaggttacgtacaatacaccaaattgtgggatccctttccaaa 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 31904972 - 31904908
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| ||| |||||||||||| | | || ||||||||||||||||| |||| ||||||||    
T  31904972 ctggaaacagcctattatgtaaaaaacagggtatgactgcgtacaatacaccaaatggtgggacc 31904908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 45948953 - 45948889
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||| ||||||||||| | |||| |||| |||||||||| || | ||||||||    
T  45948953 ctggaaacaacctcttgtgtaaaaaatagggtaaggctgcatacaatacaccaattggtgggacc 45948889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 7943032 - 7943134
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| | |||| | ||||||| | | |||||||||||||||||||  |||| |||||| | ||||||| ||  || |||| || |||||||||||    
T  7943032 ctggaaacagcatcttgtctaaaaaacagggtaagactgcgtacaatacatcaaatggtgggatccctttccagaccatgcgtatgcgggagctttagtg 7943131  T
Q  398 cac 400  Q
    |||    
T  7943132 cac 7943134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 21875055 - 21875112
Alignment:
Q  298 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaata 354  Q
    |||||||||||||||| ||| |||||| | | |||| |||||||||||||||||||||    
T  21875055 ctggaaacaacctcttgtgttaaaaaagagggtaaggctgcgtacaatacactaaata 21875112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 54374460 - 54374415
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaat 344  Q
    ||||||||||||||| ||||||||||| | |||| |||||||||||    
T  54374460 tggaaacaacctcttgtgtaaaaaatagggtaaggctgcgtacaat 54374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 761 - 896
Target Start/End: Original strand, 7759852 - 7759987
Alignment:
Q  761 tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttat 860  Q
    ||||||| |||||  |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |  || ||    
T  7759852 tgggttcagtttcactgaaaattggagatggaacagcaagattcaaaagagcaacactttgttcttcagctgttaacattctcatgattttctgtgtcat 7759951  T
Q  861 cacaaccaatctttttgctctttatgctttcacttc 896  Q
    |||||||||||| |||||||| ||||||||||||||    
T  7759952 cacaaccaatctctttgctctctatgctttcacttc 7759987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 299 - 399
Target Start/End: Original strand, 43207539 - 43207640
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaa-tagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||||||||||||| ||||| | | |||||| || |||||||||| ||| | |||||||||||| ||| ||  | ||||| ||||||||||||||    
T  43207539 tggaaacaacctcttatgtgaaaaacagggtaagacggcatacaatacaccaaattggtgggacctcttcccagaccctatgtatgcgagagctttagtg 43207638  T
Q  398 ca 399  Q
    ||    
T  43207639 ca 43207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 10163806 - 10163866
Alignment:
Q  302 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||  |||| ||||||||    
T  10163806 aaacaacctcttatgtaaaaaatatgataagattgtatacaatacatcaaatggtgggacc 10163866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 46248067 - 46248004
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  46248067 tggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 46248004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 23768434 - 23768334
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgc 398  Q
    |||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||  ||| ||| ||  || |||| || ||||||||||||    
T  23768434 tggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacaccttcccagaccctgcgtatgcgggagctttagtgc 23768335  T
Q  399 a 399  Q
    |    
T  23768334 a 23768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 32632671 - 32632567
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| |||||| ||||||||  | | |||| ||||||||||||||| |||| |||||||| ||| ||||||  ||  ||| || |||||| ||||    
T  32632671 ctggaaacagcctcttgtgtaaaaac-agggtaaggctgcgtacaatacaccaaatggtgggaccccttcccaaaccctgcatatgcgggagcttgagtg 32632573  T
Q  398 caccag 403  Q
    ||||||    
T  32632572 caccag 32632567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 33872024 - 33871920
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    |||||||||||||||| ||||||||  | |||||| ||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| ||||||||||||||    
T  33872024 ctggaaacaacctcttgtgtaaaaac-aggataaggctgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgagagctttagtg 33871926  T
Q  398 caccag 403  Q
    ||||||    
T  33871925 caccag 33871920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 11617703 - 11617639
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  11617703 ctggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 11617639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 19427004 - 19426940
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| |||||| ||||||||||| | |||||||||||||||||||| |||| ||||||||    
T  19427004 ctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtacaatacaccaaatggtgggacc 19426940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 23419789 - 23419725
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  23419789 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 23419725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 7879658 - 7879722
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||| ||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  7879658 ctggaaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacc 7879722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 46354214 - 46354264
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    |||||||||||||||| ||||||||| | | |||| |||||||||||||||    
T  46354214 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacac 46354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 19977829 - 19977724
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| |||||| ||||||||||| ||||||  |||||||||||||| |||| |||||| | ||| || ||| |||||||| || |||||||||||    
T  19977829 ctggaaacagcctcttttgtaaaaaataggataaggttgcgtacaatacaccaaatggtgggatcccttcccgaaccttgtgtatgcgggagctttagtg 19977730  T
Q  398 caccag 403  Q
    ||||||    
T  19977729 caccag 19977724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 32781401 - 32781299
Alignment:
Q  300 ggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgca 399  Q
    |||||||||||||| ||||||||| | | |||||||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| || ||||||| |||||    
T  32781401 ggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgggagcttt-gtgca 32781303  T
Q  400 ccag 403  Q
    ||||    
T  32781302 ccag 32781299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 26684715 - 26684632
Alignment:
Q  318 aaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 401  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||||| || |||  || |||| || |||||||| ||||||    
T  26684715 aaaaaatatggtaaggctgcgtacaatatactaaatggtgggacctcttcccgaaccctgcgtatgcgggagctttaatgcacc 26684632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 11514456 - 11514558
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| |||||| ||||||||| |   |||| ||||||||||||||| |||| |||||||| ||| ||| ||  || |||| || |||||||||||    
T  11514456 ctggaaacagcctcttgtgtaaaaaacaaagtaaggctgcgtacaatacaccaaatggtgggacc-cttcccagaccctgcgtatgcgggagctttagtg 11514554  T
Q  398 cacc 401  Q
    ||||    
T  11514555 cacc 11514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 5450305 - 5450370
Alignment:
Q  298 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||| ||| |||||| ||| |||| ||||||||||||||| |||  ||||||||    
T  5450305 ctggaaacaacctcttgtgtaaaaaaacatggtaaggctgcgtacaatacaccaaagggtgggacc 5450370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 46849 - 46954
Alignment:
Q  296 tgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttag 395  Q
    |||||||||||||||||| ||||||||||| | ||||  |||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||    
T  46849 tgctggaaacaacctcttgtgtaaaaaatagggtaaggttgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 46948  T
Q  396 tgcacc 401  Q
    ||||||    
T  46949 tgcacc 46954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 19027868 - 19027971
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||||| |||| ||||||||| | | |||| ||||||||||||||| || | |||||||| ||||||| ||| || ||||  | |||||||||||    
T  19027868 ctggaaacaacatcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaattggtgggacccctttccagactctgcgtatgtgggagctttagtg 19027967  T
Q  398 cacc 401  Q
    ||||    
T  19027968 cacc 19027971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 9987949 - 9987885
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||| |||||| |||| | |||| |||| |||||||||| |||| ||||||||    
T  9987949 ctggaaacaacctcttgtgtaaacaatagggtaaggctgcatacaatacaccaaatggtgggacc 9987885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 10660424 - 10660474
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10660424 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10660474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 10874569 - 10874619
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10874569 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10874619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 16408718 - 16408668
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    ||||||||| |||||| ||||||||| | | ||||||||||||||||||||    
T  16408718 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacac 16408668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 10380053 - 10379997
Alignment:
Q  302 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 359  Q
    |||||||||||| |||||||| || ||||| | |||||||||||||| ||||||||||    
T  10380053 aaacaacctcttgtgtaaaaa-taggataaaattgcgtacaatacaccaaatagtggg 10379997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 14983857 - 14983918
Alignment:
Q  301 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||| |||||| ||||||||||| | ||||  ||| ||||||||||||||| ||||||||    
T  14983857 gaaacagcctcttgtgtaaaaaatagggtaaggttgcctacaatacactaaatggtgggacc 14983918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 51865149 - 51865092
Alignment:
Q  302 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 359  Q
    ||||| |||||| ||||||||| ||| |||| ||||||||||||||| |||| |||||    
T  51865149 aaacagcctcttgtgtaaaaaacatggtaaggctgcgtacaatacaccaaatggtggg 51865092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 22187305 - 22187355
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22187305 ctggaaacagcctcttgtgtaaaaaacatgataagactgcgtacaatacac 22187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 1405207 - 1405271
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||||| |||||||||   ||||  |||||||||||||| |||| ||||||||    
T  1405207 ctggaaacaacctcttatataaaaaatagagtaagtttgcgtacaatacaccaaatggtgggacc 1405271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 24448910 - 24448974
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| ||| || ||||||||||| | |||| ||||||||||||||| |||| ||||||||    
T  24448910 ctggaaacagccttttgtgtaaaaaatagggtaaggctgcgtacaatacaccaaatggtgggacc 24448974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 12006445 - 12006395
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    |||||||||||||||||||||||||||| | |||| || | ||||||||||    
T  12006445 ctggaaacaacctcttatgtaaaaaatagggtaaggctccatacaatacac 12006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 44530170 - 44530233
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  44530170 tggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 44530233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 8897879 - 8897815
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||| ||| ||||||||||| | |||| || |||||||||||| |||| ||||||||    
T  8897879 ctggaaacaaccgcttgtgtaaaaaatagggtaaggctacgtacaatacaccaaatggtgggacc 8897815  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 36720816 - 36720880
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  36720816 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 36720880  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 12625909 - 12625974
Alignment:
Q  298 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||| ||| |||||| | | ||||||||| |||||||||| |||| ||||||||    
T  12625909 ctggaaacaacctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggacc 12625974  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 399
Target Start/End: Complemental strand, 28817741 - 28817640
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| |||||| ||||||||| | | |||| |||||||||||||||  ||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  28817741 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacacccaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 28817642  T
Q  398 ca 399  Q
    ||    
T  28817641 ca 28817640  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 29877114 - 29877219
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||| ||| || ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||| ||||||    
T  29877114 ctggaaacagccttttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtg 29877213  T
Q  398 caccag 403  Q
    ||||||    
T  29877214 caccag 29877219  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 399
Target Start/End: Original strand, 36918144 - 36918245
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 397  Q
    ||||||||||  |||||||||||||| | | |||| ||| ||||||||||| ||||||| |||   ||| ||||||  | ||||| ||||||||||| ||    
T  36918144 ctggaaacaatttcttatgtaaaaaacagggtaaggctgtgtacaatacaccaaatagtaggattccttcccaaaccctatgtatgcgagagctttaatg 36918243  T
Q  398 ca 399  Q
    ||    
T  36918244 ca 36918245  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 20400688 - 20400751
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    ||||||||| ||||| ||||||||| | | |||||||||||||| |||||||||||| ||||||    
T  20400688 tggaaacaatctcttgtgtaaaaaacagggtaagactgcgtacagtacactaaatagcgggacc 20400751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 32728270 - 32728211
Alignment:
Q  299 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgg 358  Q
    ||||||||||||||||||||||||| | | |||||||| |||||||| || |||||||||    
T  32728270 tggaaacaacctcttatgtaaaaaacagggtaagactgtgtacaatataccaaatagtgg 32728211  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 3815192 - 3815128
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||  || || ||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  3815192 ctggaaacagactattgtgtaaaaaatatggtacgactgcgtacaatacaccaaatggtgggacc 3815128  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 10565602 - 10565654
Alignment:
Q  81 atcaatcgaaatggtacaagaggaagagagtgaataatttattgccacatcat 133  Q
    |||||| |||||| |||||||||  ||||||||| ||||||||||||||||||    
T  10565602 atcaattgaaatgatacaagaggttgagagtgaacaatttattgccacatcat 10565654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 6024256 - 6024303
Alignment:
Q  301 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 348  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  6024256 gaaacagcctcttgtgtaaaaaacatggtaagactgcgtacaatacac 6024303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 24751172 - 24751135
Alignment:
Q  315 tgtaaaaaatatgataagactgcgtacaatacactaaa 352  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  24751172 tgtaaaaaatagggtaagactgcgtacaatacactaaa 24751135  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 399
Target Start/End: Original strand, 58997 - 59100
Alignment:
Q  298 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac--taaatagtgggacctctttccaaactttgtgtatacgagagctttag 395  Q
    ||||||||| |||||| | ||||||| | | ||||||||||||||||||||   |||| |||||||| ||| ||| ||| || |||| || |||||||||    
T  58997 ctggaaacagcctcttgtataaaaaacagggtaagactgcgtacaatacaccaaaaatggtgggaccccttcccagactctgcgtatgcgggagctttag 59096  T
Q  396 tgca 399  Q
    ||||    
T  59097 tgca 59100  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 10134 - 10101
Alignment:
Q  329 taagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||||||| |||||||||||||    
T  10134 taagactgcgtacaatacaccaaatagtgggacc 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 20462 - 20429
Alignment:
Q  329 taagactgcgtacaatacactaaatagtgggacc 362  Q
    |||||||||||||||||||| |||||||||||||    
T  20462 taagactgcgtacaatacaccaaatagtgggacc 20429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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