View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19198_high_12 (Length: 433)

Name: NF19198_high_12
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19198_high_12
NF19198_high_12
[»] chr8 (5 HSPs)
chr8 (13-415)||(32627196-32627598)
chr8 (157-341)||(32708921-32709105)
chr8 (150-246)||(32703483-32703579)
chr8 (265-369)||(7292554-7292658)
chr8 (255-310)||(7297579-7297634)
[»] chr4 (1 HSPs)
chr4 (150-416)||(5810958-5811224)
[»] chr3 (1 HSPs)
chr3 (159-415)||(27736240-27736496)
[»] chr6 (3 HSPs)
chr6 (228-409)||(21943144-21943325)
chr6 (169-400)||(20116569-20116800)
chr6 (169-204)||(21943097-21943132)
[»] chr5 (1 HSPs)
chr5 (159-334)||(8030466-8030641)


Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 32627196 - 32627598
Alignment:
Q  13 aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627196 aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta 32627295  T
Q  113 ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627296 ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca 32627395  T
Q  213 acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627396 acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga 32627495  T
Q  313 gagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627496 gagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcag 32627595  T
Q  413 gaa 415  Q
    |||    
T  32627596 gaa 32627598  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 32708921 - 32709105
Alignment:
Q  157 tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg 256  Q
    ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||       ||||| ||||||||||||| |||||    
T  32708921 tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg 32709020  T
Q  257 ttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagta 341  Q
    ||| |||||||| ||| |||||||||| ||| |  ||||||||||||||||||||||| |||||  |||| ||||| ||||||||    
T  32709021 ttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaattggttgtagta 32709105  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 32703483 - 32703579
Alignment:
Q  150 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttctt 246  Q
    |||||| ||||||| ||||||||| ||||||||| ||||||||| || |||||||| |||||||||||| ||||||| |||||  ||||||||||||    
T  32703483 atcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatcttcgctttttctt 32703579  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 7292554 - 7292658
Alignment:
Q  265 atgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc 364  Q
    |||| |||||||||||| | ||| |  || ||||||||||||||||  || || ||| |||| ||||||| |||||||||||||||||||||  |||| |    
T  7292554 atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac 7292653  T
Q  365 ttgtg 369  Q
    |||||    
T  7292654 ttgtg 7292658  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 7297579 - 7297634
Alignment:
Q  255 tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaa 310  Q
    ||||| || |||||||||||||||||||| ||| || |||||||||||||||||||    
T  7297579 tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaa 7297634  T

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Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 150 - 416
Target Start/End: Original strand, 5810958 - 5811224
Alignment:
Q  150 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct 249  Q
    |||||| | ||||| ||| ||||| |||||||||||||||||||  |||||||||||||||| | |||||||||||| |||||    | |||||| ||||    
T  5810958 atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct 5811057  T
Q  250 acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttga 349  Q
    | |||||||| |||||||  ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||     
T  5811058 aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgt 5811157  T
Q  350 cgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaat 416  Q
     ||||||  ||||||||||||| |  |  |||||||||||||||||||||||| || ||||||||||    
T  5811158 ggacatttgaggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaat 5811224  T

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Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 159 - 415
Target Start/End: Original strand, 27736240 - 27736496
Alignment:
Q  159 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 258  Q
    ||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| || ||||    
T  27736240 tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt 27736339  T
Q  259 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 358  Q
    | ||||||   | | |||||||||| ||||| |||||||||    ||||||| |||||||||| || | |||||||||||||||||||||| ||| ||      
T  27736340 agaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctgttcgaaattgcttgtagtaagccttgatgacgtttg 27736439  T
Q  359 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaa 415  Q
    ||||||||||||| |  |  |||||||| |||||||||||||| |||||||| ||||    
T  27736440 aggggcttgtgctcgtcaggtaaatgtttcccttgttgttgtcagcaccctctggaa 27736496  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 228 - 409
Target Start/End: Original strand, 21943144 - 21943325
Alignment:
Q  228 tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttgg 327  Q
    ||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| | ||     
T  21943144 tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatga 21943243  T
Q  328 aattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccct 409  Q
    |||||||  ||||||||||||| ||||||  ||||||||||| | |  |  |||||||||||||| ||||||||| ||||||    
T  21943244 aattgctcatagtaagccttgaagacatttgaggggcttgtggtcgccaagtaaatgttgcccttattgttgtctacaccct 21943325  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 169 - 400
Target Start/End: Complemental strand, 20116800 - 20116569
Alignment:
Q  169 accatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgc 268  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||  | | ||||||  |||||  || |||| |||||||| |||||| | ||||||||    
T  20116800 accatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatgc 20116701  T
Q  269 aacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgt 368  Q
    |||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||  | ||||| |  || || ||||||| ||||||  | ||||||||    
T  20116700 aacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatcaatacgaaattgttcataatatgccttgaagacatttgatgggcttgt 20116601  T
Q  369 gctggatatataaatgttgcccttgttgttgt 400  Q
    | | | ||| ||||| ||||||||||||||||    
T  20116600 gttcgctatgtaaatattgcccttgttgttgt 20116569  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 21943097 - 21943132
Alignment:
Q  169 accatgtcattaagagccatagccaaaagttcccaa 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21943097 accatatcattaagagccatagccaaaagttcccaa 21943132  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 8030641 - 8030466
Alignment:
Q  159 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 258  Q
    |||||||||||||||||||||||| || | ||| | ||| |||||||| || |||||||| |||||   |  ||  || ||||||||||| |  | |||     
T  8030641 tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg 8030542  T
Q  259 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgct 334  Q
    | || ||| | |||||| ||||| | |||||| ||||||||||||||||| |  ||||||||| |||| |||||||    
T  8030541 agaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgct 8030466  T

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