View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19198_high_13 (Length: 425)
Name: NF19198_high_13
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 4665320 - 4664915
Alignment:
| Q |
1 |
acactaaatttttgtttgctgaattagagactaaattaagatcaaatttttctcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665320 |
acactaaatttttgtttgctgtattagagactaaattaagatcaaatttttttcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttt |
4665221 |
T |
|
| Q |
101 |
tttggtagcttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgtcatattgaataggaacgggaaaagaaagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4665220 |
tttggtagcttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgccatattgaataggaacgggaaaagaaagac |
4665121 |
T |
|
| Q |
201 |
aaaagaaatatgacgagatttagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaaaccatggaaa |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
4665120 |
aaaagaaatatgacgagattaagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaagccatgaaaa |
4665021 |
T |
|
| Q |
301 |
taaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattcttcgtccttagtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4665020 |
taaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattcttggtccttagtgt |
4664921 |
T |
|
| Q |
401 |
ctgtaa |
406 |
Q |
| |
|
|||||| |
|
|
| T |
4664920 |
ctgtaa |
4664915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 4668218 - 4668083
Alignment:
| Q |
271 |
gtttatacacattagataaaaccatggaaataaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattat |
370 |
Q |
| |
|
|||||| ||||||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4668218 |
gtttatgcacattagacaaagccacggaaataaactaaccgtagtgtcttggtgaatggaagaaacgctttgctgcaccaaaatagtcagcatacattat |
4668119 |
T |
|
| Q |
371 |
tcttgcatgaggattcttcgtccttagtgtctgtaa |
406 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4668118 |
tcttgcatgaggattcttcttccttagtgtctgtaa |
4668083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University