View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_14 (Length: 422)
Name: NF19198_high_14
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Complemental strand, 50462120 - 50461736
Alignment:
| Q |
21 |
taagctcattatgttttttcttggttatgaagcaagtgaaggggtgatggctggaattatcaacaatataattcatagaatgaggaggacatagcactta |
120 |
Q |
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| T |
50462120 |
taagctcattatgttttttcttggttatgaagcaagtgaaggggtgatggctggaattatcaacaatataattcatagaatgaggaggacatagcactta |
50462021 |
T |
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| Q |
121 |
aatacaatttgtcatacattgaattaaaaaattcaaattatctaaagagcctgaaaacatcagtttctcacatgaagaaacaagttaagattgaaagagt |
220 |
Q |
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| T |
50462020 |
--tacaatttgtcatacattgaattaaaaaattcaaattatctaaagagcctgaaaacatcagtttctcacataaagaaacaagttaagattgaaagagt |
50461923 |
T |
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| Q |
221 |
tgacgaatgttcatgggcgaaatatccgcggcaccaccatctagtaggcgtttggcgacaacaacatttgcagcatcagaaggatgataagggtcccaaa |
320 |
Q |
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| T |
50461922 |
tgacgaatgttcatcggcgaaatatccggggcaccaccatctagtaggcgtttggcgacaacaacatttgcagcatcagaaggatgataagggtcccaaa |
50461823 |
T |
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| Q |
321 |
aaatatatttggatctgtcccaacaaacctttgacgtaggaccacatgggatcaaccctccaaatctcccagccatgttgcagcaag |
407 |
Q |
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| T |
50461822 |
aaatatatttggatctgtcccaacaaacctttgacgtaggaccacatgggatcaaccctccaaatctcccagccatgttgcagcaag |
50461736 |
T |
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