View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_15 (Length: 404)
Name: NF19198_high_15
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 51106688 - 51106298
Alignment:
| Q |
15 |
atcaacaccatcatctttcgctggtggagtcgctgatgacagactccagaaggatgtttacattgcgactgcttatgaggatttagagaagctacgttga |
114 |
Q |
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| T |
51106688 |
atcaacaccatcatctttcgctggtggagtcgctgaagacagactccagaaggatgtttacattgcgactgcttatgaggatttagagaagctacgtaga |
51106589 |
T |
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| Q |
115 |
ttggtggagcaagaggattgcctcgttac-gagcctgatgctacaggttactacgcgcttcagtgggctgcactcaacaaccagacttctgttgctaagt |
213 |
Q |
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| T |
51106588 |
ttggtggagcaagagggttgcctcgttaccgagcctgatgctacgggttactacgcgcttcagtgggctgcactcaacaaccaaacttctgttgctaagt |
51106489 |
T |
|
| Q |
214 |
acatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagacct |
313 |
Q |
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| T |
51106488 |
acatcattgatcatggtggagatataaatgcaaaagatcgtagtggctagacagcattgcattggagtgccgtacggggttctgttgaggttgcagacct |
51106389 |
T |
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| Q |
314 |
tttactcaaagagggtgctcaattgaattctgcttacaagtatggttatcagacaattcatgttgctgctcgatatgatcaaacatctttc |
404 |
Q |
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| T |
51106388 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttc |
51106298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 37 - 404
Target Start/End: Complemental strand, 51116002 - 51115634
Alignment:
| Q |
37 |
ggtggagtcgctgatgacagactccagaaggatgtttacattgcgactgcttatgaggatttagagaagctacgttgattggtggagcaagaggattgcc |
136 |
Q |
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| T |
51116002 |
ggtgaagttgctgaagacagtctccgaaatgatgtgtacactgcggctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttgcc |
51115903 |
T |
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| Q |
137 |
tcgttac-gagcctgatgctacaggttactacgcgcttcagtgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggaga |
235 |
Q |
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| T |
51115902 |
tcgttaccgagcctgatggtttgggttattacgtgattcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggaga |
51115803 |
T |
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| Q |
236 |
tataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaa |
335 |
Q |
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| T |
51115802 |
tataaacgcaacagatcgtaatggccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaa |
51115703 |
T |
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| Q |
336 |
ttgaattctgcttacaagtatggttatcagacaattcatgttgctgctcgatatgatcaaacatctttc |
404 |
Q |
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| T |
51115702 |
ttgaattctgctgacaagtatgggtatcagacaacacatgttgcagctcaatatggtcatacagctttc |
51115634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 333
Target Start/End: Original strand, 48033760 - 48033868
Alignment:
| Q |
225 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
324 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
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| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
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| Q |
325 |
agggtgctc |
333 |
Q |
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| T |
48033860 |
agggtgctc |
48033868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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