View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_20 (Length: 370)
Name: NF19198_high_20
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 97 - 354
Target Start/End: Original strand, 42663100 - 42663357
Alignment:
| Q |
97 |
gtcgtcccgccgatgaaaacatccgcgacgaagcccgtcgcaaaaacgtctcccaacatctcttctccgccaaatacgtccctttcaacgccgatccatc |
196 |
Q |
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| T |
42663100 |
gtcgtcccgccgatgaaaacatccgcgacgaagcccgtcgcaaaaacgtctcccaacatctcttctccgccaaatacgtccctttcaacgccgatccatc |
42663199 |
T |
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| Q |
197 |
ttccaccgaatcctactctctcgacgagatcgtctaccgttctcaatccggcgatcttctcgacgtgcagcacgacctaaccgccttgaagaaattcgac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663200 |
ttccaccgaatcctactctctcgacgagatcgtctaccgttctcaatccggcgatcttctcgacgtgcagcacgacctaaccgccttgaagaaattcgac |
42663299 |
T |
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| Q |
297 |
ggcgcttattggcgtaacctcttcgattcacgcgtcggtaaaactacatggccttatg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663300 |
ggcgcttattggcgtaacctcttcgattcacgcgtcggtaaaactacatggccttatg |
42663357 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 52165383 - 52165449
Alignment:
| Q |
288 |
aaattcgacggcgcttattggcgtaacctcttcgattcacgcgtcggtaaaactacatggccttatg |
354 |
Q |
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| T |
52165383 |
aaattcgacggcgcgtactggcgcaacctattcgattcgcgcgtgggtaaaaccacttggccttatg |
52165449 |
T |
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