View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_21 (Length: 352)
Name: NF19198_high_21
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_21 |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 43 - 344
Target Start/End: Complemental strand, 1486708 - 1486407
Alignment:
| Q |
43 |
gttttcactttagtaatccaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgaggactcaggacaaaagaaaaattgg |
142 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1486708 |
gttttcactttagtaatcaaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgagaactcaggacaaaagaaaaattgg |
1486609 |
T |
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| Q |
143 |
ccaaaagagatttactttaaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1486608 |
ccaaaagagatttactttaaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaa |
1486509 |
T |
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| Q |
243 |
accatcatttgtcactatgtcttatcagttctatacacactaagagtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctg |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1486508 |
accatcatttgtcactatgtcttatcagttctatacacactaagagtaattaaacaacaatgaaaattaccttagtttcattgttttcctttcttctctg |
1486409 |
T |
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| Q |
343 |
ct |
344 |
Q |
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|| |
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| T |
1486408 |
ct |
1486407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 43 - 344
Target Start/End: Complemental strand, 1897 - 1594
Alignment:
| Q |
43 |
gttttcactttagtaatccaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgaggactcaggacaaaagaaaaattgg |
142 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1897 |
gttttcactttagtaatcaaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgagaactcaggacaaaagaaaaattgg |
1798 |
T |
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| Q |
143 |
ccaaaagagattt-acttt-aaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttata |
240 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1797 |
ccaaaagagattttacttttaaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttata |
1698 |
T |
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| Q |
241 |
aaaccatcatttgtcactatgtcttatcagttctatacacactaagagtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctc |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1697 |
aaaccatcatttgtcactatgtcttatcagttctatacacactaagagtaattaaacaacaatgaaaattaccttagtttcattgttttcctttcttctc |
1598 |
T |
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| Q |
341 |
tgct |
344 |
Q |
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|||| |
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| T |
1597 |
tgct |
1594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 5554452 - 5554395
Alignment:
| Q |
287 |
agtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
344 |
Q |
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||||||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||| |
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| T |
5554452 |
agtaattaaacaacaatgaaaattacattagtgtcattgttttccttccttcgctgct |
5554395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 5859306 - 5859260
Alignment:
| Q |
295 |
aacaacaatgaaaattactttagtttcattgttttcctttcttctct |
341 |
Q |
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| T |
5859306 |
aacaacaatgagaattacaatactttcattgttttcctttcttctct |
5859260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 5554565 - 5554528
Alignment:
| Q |
153 |
tttactttaaaatgatgcaatgtttagttcccattgca |
190 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
5554565 |
tttactttgaaatgatgcaatgtttagttgccattgca |
5554528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 5851963 - 5852020
Alignment:
| Q |
287 |
agtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
344 |
Q |
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||||||| ||||||||||| |||||| ||| || ||||||||||||| ||||||||| |
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| T |
5851963 |
agtaattaaacaacaatgagaattacattacttccattgttttccttcattctctgct |
5852020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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