View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_24 (Length: 344)
Name: NF19198_high_24
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_24 |
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| [»] scaffold0299 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 6681998 - 6681704
Alignment:
| Q |
16 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacata |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6681998 |
ctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacata |
6681899 |
T |
|
| Q |
116 |
ctcaaatttatatacnnnnnnngaaggatgaaaattacaacaattttgtcgaactgtttacgcttaagcttcaacgaaatttaatatgcatcatcaaagc |
215 |
Q |
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|||||||||||||| ||| ||| ||||| |||||| || |||||| |||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
6681898 |
atcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgagctgtttacgctt--gcttcaacgaaatttaatatgcttcatcaaaga |
6681801 |
T |
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| Q |
216 |
taataaaatttgccaagtgatcgctgcacgttgactgcttataaccacttattgtgcactctatatattcagaaagattcattgaccaatgactgct |
312 |
Q |
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|||||||||||| ||||||||| | ||||||| |||||||| ||||| ||||||||||||||||||||| | |||||||||||| ||||||| |||| |
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| T |
6681800 |
taataaaatttggcaagtgatcccggcacgttcactgcttaaaaccatttattgtgcactctatatattaacaaagattcattggccaatgaatgct |
6681704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 6771334 - 6771416
Alignment:
| Q |
16 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
98 |
Q |
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| T |
6771334 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
6771416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 6670861 - 6670820
Alignment:
| Q |
182 |
agcttcaacgaaatttaatatgcatcatcaaagctaataaaa |
223 |
Q |
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| T |
6670861 |
agcttcaacgaaatttaatatgcttcatcaaagctgataaaa |
6670820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 6682096 - 6682044
Alignment:
| Q |
16 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattt |
68 |
Q |
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||||||| |||||||||||| || | ||||| |||||||||||||||| |||| |
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| T |
6682096 |
ctctcaatcattgaatatacattcacaacaatacaaaattgaatctctaattt |
6682044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 36845709 - 36846038
Alignment:
| Q |
16 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaa-tcaataataagcctattcctaacc-------tatgtat |
107 |
Q |
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||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||| |
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| T |
36845709 |
ctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaatgaataataaggctattcctaacccctaacctatgtat |
36845808 |
T |
|
| Q |
108 |
gttacatact---caaatttatatacnnnnnnngaaggatgaaaattacaaca---attttgtcgaactgtttacgcttaagcttcaacgaaatttaata |
201 |
Q |
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| ||||| | ||||||||||||| ||| ||||||||| |||||| ||| || |||||||||| |||| ||||||| ||||||||| | |
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| T |
36845809 |
at-acataataatcaaatttatatacacaaaaggaaagatgaaaatcacaacactaattacgttaaactgtttacactta-gcttcaatgaaatttaaaa |
36845906 |
T |
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| Q |
202 |
tgcatcatcaaagctaataaaatttgccaagtgatcgctgcacgttgactgcttataaccacttattgtgcactctatatattcagaaagattcattgac |
301 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | |
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| T |
36845907 |
tgcttcatcaaagctaataaaatttgtcaagtgatcgctgcatgttgactgcttataacgacttgttgtgtactctatatattcacaaagattcattggc |
36846006 |
T |
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| Q |
302 |
caatgactgctctgtcgctttccaaaacttca |
333 |
Q |
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| T |
36846007 |
cagcgactgttccatcgctttccaaaacttca |
36846038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 6160153 - 6160266
Alignment:
| Q |
16 |
ctctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacata |
115 |
Q |
| |
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|||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
6160153 |
ctctcaaccattgaatatacattcacaacaacacaaaattgaatctcttattttaagagaatgaataataaggctattcctaacctatgtat-atacata |
6160251 |
T |
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| Q |
116 |
ctcaaatttatatac |
130 |
Q |
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| T |
6160252 |
atcaaatttacatac |
6160266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 6160363 - 6160435
Alignment:
| Q |
261 |
cacttattgtgcactctatatattcagaaagattcattgaccaatgactgctctgtcgctttccaaaacttca |
333 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||| || ||||| |||||||||||||||||| |
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| T |
6160363 |
cacttattgtgcactctatatattcacaaagattcattggccaacgattgctccatcgctttccaaaacttca |
6160435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 17414 - 17228
Alignment:
| Q |
15 |
actctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacat |
114 |
Q |
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|||||| ||||||||||| | || | |||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| |||||||||| |
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| T |
17414 |
actctctaccattgaataaatattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacat |
17315 |
T |
|
| Q |
115 |
actcaaatttatatacnnnnnnngaaggatgaaaattacaacaattttgtcgaactgtttacgcttaagcttcaacgaaatttaata |
201 |
Q |
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| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
17314 |
aaacaaatttatatacagaaaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttatgcttcaacgaaatttaata |
17228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 17638 - 17452
Alignment:
| Q |
15 |
actctcaaccattgaatatacttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacat |
114 |
Q |
| |
|
|||||| ||||||||||| | || | |||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| |||||||||| |
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| T |
17638 |
actctctaccattgaataaatattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacat |
17539 |
T |
|
| Q |
115 |
actcaaatttatatacnnnnnnngaaggatgaaaattacaacaattttgtcgaactgtttacgcttaagcttcaacgaaatttaata |
201 |
Q |
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| T |
17538 |
aaacaaatttatatacagaaaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttaggcttcaacgaaatttaata |
17452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 17227 - 17131
Alignment:
| Q |
237 |
cgctgcacgttgactgcttataaccacttattgtgcactctatatattcagaaagattcattgaccaatgactgctctgtcgctttccaaaacttca |
333 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17227 |
cgctgcatgttgactgtttataaccacttattgtgcactctatatattcacaaagattcattgaccaatgactgctccgtcgctttccaaaacttca |
17131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 17451 - 17418
Alignment:
| Q |
237 |
cgctgcacgttgactgcttataaccacttattgt |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17451 |
cgctgcacgttgactgcttataaccacttattgt |
17418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 46524470 - 46524415
Alignment:
| Q |
275 |
tctatatattcagaaagattcattgaccaatgactgctctgtcgctttccaaaact |
330 |
Q |
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|||||||||||| ||||||||||||| ||| ||||||| |||| ||||| |||||| |
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| T |
46524470 |
tctatatattcacaaagattcattgatcaacgactgctttgtcactttcaaaaact |
46524415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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