View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_25 (Length: 340)
Name: NF19198_high_25
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 16802740 - 16803068
Alignment:
| Q |
12 |
aatactcctttaacaataaaaatcttaaacaaaaattatttgaatatgttatttttcaaacagatagaaataaacttgatcaaacacaaataaaatgtaa |
111 |
Q |
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| T |
16802740 |
aatactcctttaacaataaaaatcttaaacaaaaattatttgaatatgttatttttcaaacagatagaaataaacttgatcaaacacaaataaaatataa |
16802839 |
T |
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| Q |
112 |
atatatcatcatggaacgaaaatgaatttattattaattatttcataaatcaccaaaattaagaataaattaacttttggtacaatctgtgggcttaaag |
211 |
Q |
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| T |
16802840 |
atatatcatcatggaacgaaaatgaatttattattaattatttcataaatcaccaaaattaagaataaattaacttttggtacaatctgtgggcttaaag |
16802939 |
T |
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| Q |
212 |
gagataatannnnnnnggagaccaaatccaaccaaaaaattttgttgtgctatgttaccaataatagtaccaggaaaatttccaactgaaacaaaagcaa |
311 |
Q |
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| T |
16802940 |
gagataatatttttttggagatcaaatccaaccaaaaagttttgttgtgctatgttaccaataatagtaccaggaaaatttccaactgaaacaaaagcaa |
16803039 |
T |
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| Q |
312 |
agcacacaacctcatgatcaattgggtaa |
340 |
Q |
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| T |
16803040 |
agcacacaacctcatgatcaattgggtaa |
16803068 |
T |
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