View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_31 (Length: 269)
Name: NF19198_high_31
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38180214 - 38179972
Alignment:
| Q |
1 |
ttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaac |
100 |
Q |
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| T |
38180214 |
ttgaaagccgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctatatgaagaaac |
38180115 |
T |
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| Q |
101 |
caaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38180114 |
caaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgacgttggtaagatcaaaatgataccaatcggaccattg |
38180015 |
T |
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| Q |
201 |
attccatatgctttcttgggcggtaaagatcctaatgatactt |
243 |
Q |
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| T |
38180014 |
attccatatactttcttgggcggtaaagatcctaatgatactt |
38179972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38184883 - 38184641
Alignment:
| Q |
1 |
ttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaac |
100 |
Q |
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| T |
38184883 |
ttgaaagccgtgaccttccctcttttttattatcttcaaatatatatactatcgctactcgatctttcaaagaacaaattcaagttctagatgaagaaac |
38184784 |
T |
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| Q |
101 |
caaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattg |
200 |
Q |
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| T |
38184783 |
caaccctacagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattg |
38184684 |
T |
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| Q |
201 |
attccatatgctttcttgggcggtaaagatcctaatgatactt |
243 |
Q |
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| T |
38184683 |
attccatatgctttcttgggcggtaaagatcctaatgatactt |
38184641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 38170389 - 38170182
Alignment:
| Q |
12 |
gaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctaga-tgaagaaaccaaccctaaa |
110 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| | ||| || |||| ||||||| |||||||| ||| | || |||||||| |||||| | | |
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| T |
38170389 |
gaccttccctcttttttattggcttcaaatacatacacttttgctcttccatctctcaaagagcaaattca-gttgttgaatgaagaaatcaacccaaga |
38170291 |
T |
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| Q |
111 |
gtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatg |
210 |
Q |
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| T |
38170290 |
gtacttgtgaacaccgttgaggagtttgaactggatgcactgaataaagttgatgttggtaagatcaaaatgatacccatcggaccgttgattccatctg |
38170191 |
T |
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| Q |
211 |
ctttcttgg |
219 |
Q |
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||||||||| |
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| T |
38170190 |
ctttcttgg |
38170182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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