View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19198_high_33 (Length: 253)

Name: NF19198_high_33
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19198_high_33
NF19198_high_33
[»] chr4 (40 HSPs)
chr4 (44-203)||(50001026-50001187)
chr4 (43-203)||(53619431-53619593)
chr4 (41-203)||(23255556-23255720)
chr4 (44-203)||(3329842-3330003)
chr4 (61-203)||(39001260-39001404)
chr4 (54-203)||(4419120-4419270)
chr4 (56-203)||(55933560-55933709)
chr4 (50-203)||(48657015-48657168)
chr4 (59-203)||(600792-600938)
chr4 (59-203)||(30940832-30940978)
chr4 (57-166)||(31846962-31847071)
chr4 (64-190)||(8738071-8738199)
chr4 (73-203)||(50464396-50464528)
chr4 (59-149)||(26521350-26521440)
chr4 (59-133)||(40392726-40392800)
chr4 (59-203)||(16955321-16955467)
chr4 (101-189)||(23242803-23242893)
chr4 (58-153)||(47585160-47585255)
chr4 (60-146)||(12053329-12053415)
chr4 (59-133)||(23604951-23605025)
chr4 (44-203)||(46440989-46441150)
chr4 (44-133)||(12917895-12917984)
chr4 (51-120)||(41372253-41372322)
chr4 (197-253)||(30940723-30940779)
chr4 (59-210)||(132246-132399)
chr4 (57-203)||(34107796-34107944)
chr4 (106-200)||(54190954-54191050)
chr4 (83-159)||(1041310-1041386)
chr4 (83-167)||(50442617-50442701)
chr4 (123-203)||(52403868-52403948)
chr4 (83-146)||(50463102-50463165)
chr4 (71-203)||(53170386-53170520)
chr4 (120-203)||(56462206-56462291)
chr4 (83-160)||(9601095-9601171)
chr4 (197-245)||(50000917-50000965)
chr4 (203-253)||(23255777-23255827)
chr4 (112-160)||(3698685-3698733)
chr4 (112-203)||(34213534-34213626)
chr4 (196-232)||(45760839-45760875)
chr4 (110-150)||(49354225-49354265)
[»] chr3 (35 HSPs)
chr3 (43-203)||(26772603-26772765)
chr3 (44-203)||(38670980-38671141)
chr3 (59-199)||(39583333-39583475)
chr3 (59-203)||(53785570-53785716)
chr3 (59-203)||(32546656-32546802)
chr3 (58-203)||(44198627-44198774)
chr3 (103-203)||(13582415-13582517)
chr3 (83-160)||(26276500-26276577)
chr3 (90-203)||(26856862-26856977)
chr3 (110-203)||(52411991-52412086)
chr3 (59-203)||(46940873-46941019)
chr3 (56-141)||(50657235-50657320)
chr3 (59-203)||(44694-44843)
chr3 (111-203)||(38145969-38146063)
chr3 (83-178)||(4669788-4669885)
chr3 (110-203)||(38978899-38978994)
chr3 (58-150)||(49017827-49017919)
chr3 (59-203)||(4763893-4764038)
chr3 (87-203)||(37133099-37133217)
chr3 (59-203)||(52741612-52741758)
chr3 (59-133)||(8592002-8592076)
chr3 (104-210)||(5338552-5338657)
chr3 (59-167)||(4472923-4473031)
chr3 (123-167)||(53502592-53502636)
chr3 (59-190)||(3643014-3643145)
chr3 (211-246)||(7502002-7502037)
chr3 (197-244)||(26856755-26856802)
chr3 (58-147)||(2601689-2601778)
chr3 (197-246)||(38670872-38670920)
chr3 (102-150)||(26393841-26393889)
chr3 (197-253)||(26772825-26772881)
chr3 (197-245)||(37132991-37133039)
chr3 (197-245)||(39583221-39583269)
chr3 (197-253)||(44198834-44198890)
chr3 (167-203)||(51234587-51234623)
[»] chr8 (30 HSPs)
chr8 (43-203)||(39434514-39434674)
chr8 (44-199)||(42659073-42659230)
chr8 (63-203)||(38815159-38815301)
chr8 (59-201)||(22589438-22589582)
chr8 (83-203)||(37514106-37514228)
chr8 (106-203)||(3187878-3187976)
chr8 (59-203)||(18804474-18804619)
chr8 (59-145)||(18596759-18596845)
chr8 (56-127)||(44337198-44337268)
chr8 (122-203)||(3821148-3821231)
chr8 (202-253)||(8619886-8619937)
chr8 (67-190)||(25021927-25022052)
chr8 (90-167)||(8882236-8882313)
chr8 (90-150)||(24320229-24320289)
chr8 (59-150)||(8619683-8619774)
chr8 (64-147)||(24350880-24350963)
chr8 (101-167)||(6592479-6592545)
chr8 (43-91)||(25326159-25326207)
chr8 (197-253)||(39434734-39434790)
chr8 (59-150)||(500103-500194)
chr8 (111-154)||(8540531-8540574)
chr8 (59-203)||(24124889-24125035)
chr8 (90-160)||(4699763-4699833)
chr8 (101-167)||(6792172-6792238)
chr8 (112-150)||(9259447-9259485)
chr8 (86-181)||(24451010-24451105)
chr8 (58-127)||(15566139-15566208)
chr8 (197-253)||(500294-500350)
chr8 (91-167)||(6618178-6618254)
chr8 (197-253)||(35739970-35740026)
[»] chr7 (41 HSPs)
chr7 (57-193)||(45003007-45003145)
chr7 (45-203)||(28517387-28517547)
chr7 (60-203)||(40726580-40726725)
chr7 (45-203)||(5825120-5825280)
chr7 (59-201)||(21326940-21327084)
chr7 (162-245)||(1249618-1249701)
chr7 (71-203)||(45613942-45614076)
chr7 (50-132)||(38766176-38766258)
chr7 (50-121)||(38832154-38832225)
chr7 (111-203)||(48539094-48539188)
chr7 (71-203)||(19277164-19277300)
chr7 (59-167)||(45974737-45974845)
chr7 (59-203)||(25187031-25187177)
chr7 (44-121)||(36931887-36931963)
chr7 (20-80)||(1249560-1249620)
chr7 (110-210)||(23037457-23037559)
chr7 (112-203)||(27521385-27521478)
chr7 (90-203)||(982841-982956)
chr7 (91-167)||(27027768-27027844)
chr7 (59-203)||(4501120-4501266)
chr7 (91-203)||(24527482-24527596)
chr7 (112-203)||(43856788-43856881)
chr7 (197-245)||(30216050-30216098)
chr7 (59-150)||(2904242-2904332)
chr7 (59-203)||(10904979-10905125)
chr7 (83-150)||(32584485-32584552)
chr7 (211-253)||(25186920-25186962)
chr7 (106-181)||(38839234-38839311)
chr7 (100-203)||(41117870-41117975)
chr7 (59-108)||(2520918-2520967)
chr7 (112-178)||(5714954-5715022)
chr7 (109-150)||(32336318-32336359)
chr7 (110-203)||(22197899-22197993)
chr7 (110-203)||(22239828-22239922)
chr7 (106-150)||(41071756-41071800)
chr7 (83-146)||(34856750-34856813)
chr7 (202-244)||(24566960-24567002)
chr7 (59-164)||(9281277-9281382)
chr7 (59-164)||(9292248-9292353)
chr7 (197-245)||(21326830-21326878)
chr7 (197-245)||(28517279-28517327)
[»] chr6 (20 HSPs)
chr6 (45-203)||(17249405-17249565)
chr6 (50-203)||(33220811-33220966)
chr6 (56-203)||(357816-357965)
chr6 (44-150)||(7749327-7749433)
chr6 (89-203)||(32115609-32115725)
chr6 (101-203)||(34304399-34304503)
chr6 (64-188)||(3137362-3137488)
chr6 (94-150)||(28625827-28625883)
chr6 (59-150)||(34168782-34168872)
chr6 (110-190)||(959493-959575)
chr6 (111-210)||(13398275-13398376)
chr6 (64-190)||(28009100-28009228)
chr6 (59-110)||(45816-45867)
chr6 (44-111)||(32531042-32531109)
chr6 (71-132)||(749501-749562)
chr6 (113-203)||(4166022-4166114)
chr6 (113-203)||(4206696-4206788)
chr6 (105-146)||(34554435-34554476)
chr6 (197-253)||(24016404-24016460)
chr6 (90-203)||(29338179-29338294)
[»] chr1 (36 HSPs)
chr1 (45-203)||(34644413-34644573)
chr1 (45-163)||(5453942-5454060)
chr1 (50-203)||(48841182-48841337)
chr1 (91-203)||(2764372-2764486)
chr1 (43-203)||(47459528-47459689)
chr1 (59-203)||(22346756-22346902)
chr1 (59-203)||(24177611-24177757)
chr1 (59-159)||(28493477-28493577)
chr1 (59-146)||(868560-868647)
chr1 (59-150)||(1114023-1114114)
chr1 (91-203)||(2898595-2898709)
chr1 (59-203)||(21472864-21473010)
chr1 (83-203)||(28041227-28041349)
chr1 (59-150)||(30688418-30688509)
chr1 (59-145)||(19035340-19035426)
chr1 (59-210)||(31737416-31737568)
chr1 (83-167)||(4611074-4611158)
chr1 (90-203)||(20259897-20260012)
chr1 (59-138)||(7213104-7213183)
chr1 (61-203)||(4862089-4862234)
chr1 (204-253)||(4861973-4862022)
chr1 (72-133)||(31742485-31742546)
chr1 (197-245)||(21473070-21473118)
chr1 (111-150)||(45835341-45835380)
chr1 (202-244)||(36486958-36487000)
chr1 (64-145)||(35387809-35387890)
chr1 (95-150)||(7483781-7483836)
chr1 (79-146)||(21934258-21934325)
chr1 (90-155)||(17077966-17078031)
chr1 (59-200)||(6670208-6670351)
chr1 (197-245)||(19035514-19035562)
chr1 (197-253)||(22346962-22347018)
chr1 (197-253)||(29169777-29169833)
chr1 (197-253)||(34644633-34644689)
chr1 (112-156)||(45057585-45057629)
chr1 (197-253)||(50161401-50161457)
[»] chr5 (30 HSPs)
chr5 (45-203)||(35310295-35310455)
chr5 (50-203)||(430454-430609)
chr5 (56-203)||(13167010-13167159)
chr5 (56-203)||(33692155-33692301)
chr5 (50-203)||(25663132-25663287)
chr5 (43-185)||(27336540-27336684)
chr5 (90-203)||(2566195-2566310)
chr5 (50-127)||(2917539-2917616)
chr5 (59-203)||(42921559-42921704)
chr5 (63-190)||(23023460-23023589)
chr5 (56-190)||(32269910-32270045)
chr5 (197-253)||(35456023-35456079)
chr5 (105-203)||(22188755-22188855)
chr5 (102-203)||(37873738-37873841)
chr5 (197-244)||(8100619-8100666)
chr5 (83-145)||(11005763-11005825)
chr5 (71-165)||(15292165-15292259)
chr5 (196-253)||(27336759-27336816)
chr5 (102-178)||(14423591-14423667)
chr5 (90-150)||(15506770-15506830)
chr5 (197-253)||(37873622-37873678)
chr5 (89-152)||(8100445-8100507)
chr5 (43-159)||(18176759-18176877)
chr5 (110-160)||(34475953-34476003)
chr5 (113-150)||(12033346-12033383)
chr5 (73-142)||(23092694-23092763)
chr5 (93-146)||(23424030-23424083)
chr5 (197-245)||(8858983-8859031)
chr5 (197-233)||(43115461-43115497)
chr5 (197-245)||(43129601-43129649)
[»] chr2 (34 HSPs)
chr2 (44-203)||(28224846-28225007)
chr2 (59-203)||(17344499-17344645)
chr2 (52-189)||(27494165-27494304)
chr2 (59-203)||(4413166-4413312)
chr2 (59-203)||(13413212-13413358)
chr2 (83-203)||(9685515-9685637)
chr2 (59-203)||(41868008-41868153)
chr2 (105-203)||(27502269-27502369)
chr2 (59-143)||(3208406-3208490)
chr2 (59-150)||(2626002-2626093)
chr2 (112-203)||(16351944-16352037)
chr2 (59-133)||(41702133-41702207)
chr2 (59-116)||(10587144-10587201)
chr2 (59-144)||(42122678-42122763)
chr2 (59-139)||(30602350-30602430)
chr2 (59-150)||(18745109-18745200)
chr2 (43-112)||(38723985-38724054)
chr2 (90-150)||(15515302-15515362)
chr2 (130-203)||(44686348-44686423)
chr2 (73-160)||(11921349-11921436)
chr2 (83-201)||(19161885-19162005)
chr2 (197-253)||(4413050-4413106)
chr2 (71-127)||(20143123-20143179)
chr2 (111-154)||(3825639-3825682)
chr2 (202-245)||(13147089-13147132)
chr2 (83-203)||(32029186-32029308)
chr2 (100-203)||(7760945-7761050)
chr2 (83-201)||(23485038-23485159)
chr2 (196-253)||(16351825-16351882)
chr2 (64-101)||(19514202-19514239)
chr2 (103-160)||(26407839-26407896)
chr2 (197-245)||(5532486-5532534)
chr2 (43-139)||(34250153-34250249)
chr2 (197-245)||(41867900-41867948)
[»] scaffold0009 (1 HSPs)
scaffold0009 (59-203)||(102967-103113)
[»] scaffold0309 (1 HSPs)
scaffold0309 (59-151)||(5185-5277)
[»] scaffold0406 (1 HSPs)
scaffold0406 (64-154)||(6754-6844)
[»] scaffold0148 (1 HSPs)
scaffold0148 (59-203)||(33111-33257)
[»] scaffold0031 (1 HSPs)
scaffold0031 (90-200)||(49307-49419)
[»] scaffold0361 (1 HSPs)
scaffold0361 (114-190)||(17392-17468)
[»] scaffold0490 (1 HSPs)
scaffold0490 (197-253)||(6401-6457)
[»] scaffold0110 (2 HSPs)
scaffold0110 (59-150)||(47675-47766)
scaffold0110 (205-253)||(47523-47571)
[»] scaffold0244 (1 HSPs)
scaffold0244 (102-150)||(16809-16857)
[»] scaffold0186 (1 HSPs)
scaffold0186 (202-253)||(10436-10487)
[»] scaffold0514 (1 HSPs)
scaffold0514 (101-167)||(4385-4451)
[»] scaffold1768 (1 HSPs)
scaffold1768 (58-147)||(342-431)
[»] scaffold0470 (1 HSPs)
scaffold0470 (91-167)||(7496-7572)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 50001187 - 50001026
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  50001187 atatttactattaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaaca 50001088  T
Q  144 caacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||| | ||| |||||  ||||||| |||||||||||||||||||| ||||||||    
T  50001087 caacatttatggatctaggagacataacattgctatgcataaccctttggactatatgtaga 50001026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 53619431 - 53619593
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||| ||||  ||||||||    
T  53619431 aatatttactatcaatattacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaac 53619530  T
Q  143 acaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||| ||| |||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  53619531 acaacattcatggacctaagagacataacattgttatgcataaccctttagactctatgtaga 53619593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 23255556 - 23255720
Alignment:
Q  41 aaaatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaa 140  Q
    |||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||    
T  23255556 aaaatatttactatcaatattactcacatatgaataggaggtaagcggacaacaagctgcgccgctagacttttctggatggcaaaatcaatcctcgtaa 23255655  T
Q  141 acacaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| ||| ||| || || |||||  |||||||||||||||||||||||||||||||||||||    
T  23255656 acacaatattcatggacttaggagacataacattgttatgcataaccctttggactctatgtaga 23255720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 3329842 - 3330003
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| |||||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  3329842 atatttactatcaatattacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaaca 3329941  T
Q  144 caacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    || |||| ||| ||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  3329942 cagcattcatggacctaggagacataacattgctatgcataaccctttggactctatgtaga 3330003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 39001260 - 39001404
Alignment:
Q  61 tacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    ||||||||||||||||||||| |||||| |||||| || |||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||| |||||    
T  39001260 tacttacacatgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggaccta 39001359  T
Q  161 --agagacaacattgttatgcataaccctttggactctatgtaga 203  Q
      ||| ||||||||||||||||||| |||||||||||||||||||    
T  39001360 ggagacacaacattgttatgcataatcctttggactctatgtaga 39001404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 4419120 - 4419270
Alignment:
Q  54 ttaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttat 153  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||  |||||||||||||||| ||||| |||||||||||||||| ||    
T  4419120 ttaatattacttgcacatgaataggaggcaagcgggcaacaagctgcgccgctaga-ttttttggatggcaaaaccaatcatcgtaaacacaacattcat 4419218  T
Q  154 gtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||||| |||||  |||||||||||||||||||||||| ||||||||||||    
T  4419219 ggacctaggagacataacattgttatgcataaccctttgaactctatgtaga 4419270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 55933709 - 55933560
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    |||||||||| ||||||||||||||| ||||||||||||| || || |||||||| |||||||||||||||||||||| |||||||||||||||| | |     
T  55933709 aatattacttgcacatgaataggaggcaagcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcacgg 55933610  T
Q  156 acctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||  || ||||||||| ||||||||||||||||||||||||    
T  55933609 acctaggagacataatattgttatgtataaccctttggactctatgtaga 55933560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 48657168 - 48657015
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    ||||| ||||||||||| |||||||||||||  |||| | |||||||| ||  | ||||| ||||||||| ||||||||||||| |||||||||||||||    
T  48657168 actatcaatattacttatacatgaataggagccaagcaggcaacaagccac--cactagatctttttggacggcaaaatcaatcatcgtaaacacaacat 48657071  T
Q  150 ttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||  ||||| |||||  ||||||| ||||||||| | |||||||||||||||||    
T  48657070 tcatagacctatgagacataacattgctatgcataatcatttggactctatgtaga 48657015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 600938 - 600792
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||| ||||| || ||||||||||||||||  |||| ||||||||||| |||| ||| |||    
T  600938 attatttacacttgaatagaaggcaagcggacaacaagctacgtcgctatacatttttggatggcaaaactaatcatcgtaaacacagcattaatggacc 600839  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||| ||||| ||| ||| |||| ||||||||||||    
T  600838 taggagacatgacatagttatacatgaccttttgaactctatgtaga 600792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 30940978 - 30940832
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||||| || ||||||||||||||||||||||||||||||| || | ||||||||||| ||  |||    
T  30940978 attatttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacc 30940879  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || || | |  |||||||||||||| ||| |||| ||||||||||||    
T  30940878 taggatatatgacattgttatgcatgaccttttgaactctatgtaga 30940832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 31846962 - 31847071
Alignment:
Q  57 atattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgta 156  Q
    ||||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||||||||||| ||  |||| |||  ||||||||||| ||| |    
T  31846962 atattacttacacatgaataggaggcaagcgggcaacaacctgcgccgctagacctttttggatggcataacgaatcctcgctaacacaacattcatgga 31847061  T
Q  157 cctaagagac 166  Q
    |||| |||||    
T  31847062 cctaggagac 31847071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 8738071 - 8738199
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaaga 163  Q
    ||||||||||||   ||||||||||| ||||| || |||||||| || |||||||||| ||||||||||||| ||| |||||||||| ||| ||||||||    
T  8738071 ttacacatgaatgaaaggtaagcggataacaaactgcgccgctaaacttttttggatgacaaaatcaatctttgtatacacaacattcatgaacctaaga 8738170  T
Q  164 gaca--acattgttatgcataaccctttg 190  Q
    ||||  ||||| |||||||| | ||||||    
T  8738171 gacatgacatttttatgcatgagcctttg 8738199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 50464528 - 50464396
Alignment:
Q  73 aataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--aca 170  Q
    ||||| ||| |||||||||||||||| |||||||||  |||||||||||||||||| |||| |||||||||||||||| || ||  |  ||||||  |||    
T  50464528 aatagaaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaataaatcctcgtaaacacaacattcatatatttgggagacatgaca 50464429  T
Q  171 ttgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||| |||||||  |||||| |||||    
T  50464428 ttgttatgcatgaccctttaaactctacgtaga 50464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 26521350 - 26521440
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    |||||||||||||| |||| ||| |||||||||| |||||  ||||||| ||||||||||||| ||||| ||||| |||||||||||||||    
T  26521350 attacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaacat 26521440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 40392800 - 40392726
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    |||| |||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  40392800 attatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaatc 40392726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 16955321 - 16955467
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||| ||| ||| ||||||||||||| || || ||   || |||||| |||||| ||||||||| |||||||||||||||| |||  ||    
T  16955321 attatttacacttgagtagaaggcaagcggacaacaaactgcgtcgtcggatcttttttgatggccaaatcaatcctcgtaaacacaacattcatgggcc 16955420  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||||||||    
T  16955421 taggagacatgacattgctatgcatgaccttttgaactctatgtaga 16955467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 23242803 - 23242893
Alignment:
Q  101 gccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataacccttt 189  Q
    |||| |||| ||||||||||  ||||||||||| |||||||||||| ||||||| |||||||||| |  |||||||||||||| |||||||    
T  23242803 gccgttagagctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatgacattgttatgcatgacccttt 23242893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 47585255 - 47585160
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttat 153  Q
    ||||| |||||  ||||||| ||| || | |||||||| ||||||||||| |||||||| |||| ||||| |||||||||||||||||| ||||||    
T  47585255 tattatttacatttgaatagaaggcaaacagacaacaaactacgccgctaaacctttttagatgacaaaaccaatcttcgtaaacacaaaatttat 47585160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 12053329 - 12053415
Alignment:
Q  60 ttacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    |||||||||||||||||| ||| |||| ||||||||||| || |||| | ||||||| |||||||||| ||||  ||||||||||||    
T  12053329 ttacttacacatgaatagaaggcaagcagacaacaagctgcgtcgctcggcctttttcgatggcaaaaccaattctcgtaaacacaa 12053415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 23604951 - 23605025
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    |||| |||||||||||||| ||  || ||||||||||| | |||||||||||||||||||||| |||||||||||    
T  23604951 attatttacacatgaatagaagacaaccggacaacaagttgcgccgctagacctttttggatgacaaaatcaatc 23605025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 46441150 - 46440989
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| | ||||||||||| ||||||| |||  |||||| | ||||| ||||  |||| | |||||| |||| ||||||||||| ||||||| |    
T  46441150 atatttactatcagtattacttacaaatgaataagagacaagcgggcgacaagttacgatgctaaatctttttagatgacaaaatcaatcatcgtaaata 46441051  T
Q  144 caacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
     ||  || ||| ||||| |||||  | ||||| |||||| ||||||||||||||||||||||    
T  46441050 taattttcatgaacctatgagacatagcattgctatgcacaaccctttggactctatgtaga 46440989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 12917895 - 12917984
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    ||||| ||||| |||||||||||| |||||||| |||| |||| ||||| ||| |  |||| |||||||||||||||| |||||||||||    
T  12917895 atatttactatcaatattacttactcatgaataagaggcaagcagacaataagttgtgccgttagacctttttggatgacaaaatcaatc 12917984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 41372322 - 41372253
Alignment:
Q  51 ctattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggat 120  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| | ||| ||||||||||| |||||    
T  41372322 ctatcaatattacttacacatgaataggaggcaagcagacaacaagttgcgctgctagacctttgtggat 41372253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 30940779 - 30940723
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  30940779 atgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttt 30940723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 132246 - 132399
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    ||||||||| ||||||||| ||| ||||||  |||||||| | ||| || |||||||| ||||  |||||| ||  | |||||||||||| | ||| |||    
T  132246 attacttacgcatgaatagaaggcaagcggggaacaagctgcaccgttatacctttttagatgataaaatcgattcttgtaaacacaacaatcatgaacc 132345  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtagattgtcaa 210  Q
    ||| |||||  |||||||||||| | |||||||  ||||| |||||| ||||||    
T  132346 taaaagacatgacattgttatgcttgaccctttaaactctgtgtagaatgtcaa 132399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 34107944 - 34107796
Alignment:
Q  57 atattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgta 156  Q
    |||||| |||||| ||||||| |   ||| || |||||||||  |||| || || |||||||||| ||||| ||||| |||| ||||||||||| ||| |    
T  34107944 atattatttacacttgaatagaaaacaagtgggcaacaagctgtgccgttaaacttttttggatgacaaaaccaatcctcgtgaacacaacattcatgga 34107845  T
Q  157 cctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
     ||| |||||  ||||||||||||||| ||  |||| ||||||||||||    
T  34107844 tctaggagacataacattgttatgcatgactttttgaactctatgtaga 34107796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 54191050 - 54190954
Alignment:
Q  106 tagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgt 200  Q
    |||| |||||||||| |||||| ||||||| ||||| |||| ||||||| || |||||| ||  ||||||||||||||  ||||||| |||||||||    
T  54191050 tagaactttttggatagcaaaaccaatctttgtaaatacaatatttatggacttaagagtcatgacattgttatgcatggccctttgaactctatgt 54190954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 1041310 - 1041386
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacct 159  Q
    |||||||||| ||||||||||| |||   ||||||||||| |||||||||| ||| |||||||||||| ||| ||||    
T  1041310 aagcggacaataagctacgccgttaggtttttttggatggtaaaatcaatcatcgaaaacacaacattcatgaacct 1041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 50442701 - 50442617
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    |||||| ||||||||| |||| |||  |||||||||||||||||| ||||| || ||||||||||||  ||| ||||| ||||||    
T  50442701 aagcgggcaacaagctgcgccactaaccctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctaggagaca 50442617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 52403868 - 52403948
Alignment:
Q  123 caaaatcaatcttcgtaaacacaacatttatgtacctaagagacaacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||||||||||||||||||||||  ||||||||||  | |||||| | ||| |||||||| ||| ||||||||    
T  52403868 caaaaccaatcttcgtaaacacaacatttataaacctaagagatgatattgttgtacatgaccctttgaactatatgtaga 52403948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 50463165 - 50463102
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||  |||| ||||||||||||    
T  50463165 aagcggacagcaagctgcgccgctaggtctttttggatggcaaaacaaatcctcgtaaacacaa 50463102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 53170386 - 53170520
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc--taagagaca- 167  Q
    ||||||| ||| |||| ||||||| ||| | | ||||||||||||| ||| |||||||||||| |||| ||||||||||| ||| |||  || ||||||     
T  53170386 tgaatagaaggcaagcagacaaca-gctgcactgctagacctttttagatagcaaaatcaatcctcgtgaacacaacattcatg-acctataggagacat 53170483  T
Q  168 -acattgttatgcataaccctttggactctatgtaga 203  Q
     |||||| ||||||| ||| |||| ||||||||||||    
T  53170484 gacattgctatgcatgaccttttgaactctatgtaga 53170520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 56462291 - 56462206
Alignment:
Q  120 tggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||| ||||  |||||||||||||||||||| || || ||||||  ||||||| |||||| | |||||| ||||||||||||    
T  56462291 tggcaaaaccaattctcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaactctatgtaga 56462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 9601095 - 9601171
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    |||||||||||||| | ||||| || | ||||||||||| ||||||||||| ||||||||||| || ||||| |||||    
T  9601095 aagcggacaacaagttgcgccgtta-agctttttggatgacaaaatcaatcctcgtaaacacaccacttatgaaccta 9601171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 50000965 - 50000917
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||||||| ||| ||||||    
T  50000965 atgttgattgtcagaacacgctttctcatgtttgaccactttgcttgac 50000917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 23255777 - 23255827
Alignment:
Q  203 attgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    ||||||| |||||||||||||||||||| ||| ||| |||||| |||||||    
T  23255777 attgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 23255827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 3698733 - 3698685
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    ||||| ||||||||||||||||||| |||||||||| || ||| |||||    
T  3698733 tttttagatggcaaaatcaatcttcataaacacaacgttcatgaaccta 3698685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 34213534 - 34213626
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca-acattgttatgcataaccctttggactctatgtaga 203  Q
    |||| ||||||||||| | ||| | |||||||||||||| ||| | ||| |||| | ||||||||| |||| |||||||| ||||||| ||||    
T  34213534 ttttcggatggcaaaaccgatccttgtaaacacaacattcatggaactaggagagacacattgttaggcatgaccctttgaactctatctaga 34213626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 45760875 - 45760839
Alignment:
Q  196 tatgtagattgtcaaaacacgctttctcatgtttgac 232  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  45760875 tatgttgattgtcaaaacacgctttctcatctttgac 45760839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 49354265 - 49354225
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  49354265 cctttttggacgacaaaatcaatcatcgtaaacacaacatt 49354225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 26772603 - 26772765
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    |||||| | ||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  26772603 aatatttattatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaac 26772702  T
Q  143 acaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||| ||| ||||| |||||  ||||||||||||||||| |||||| ||||||| ||||    
T  26772703 acaacattcatggacctaggagacataacattgttatgcataatcctttgtactctatataga 26772765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 38671141 - 38670980
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||| ||||| |||    
T  38671141 atatttactatcaatattatttacacataaataggaggtaagcggacaacaagctgcgccgctagacttttttagatggcaaaaccaatcctcgtacaca 38671042  T
Q  144 caacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||| ||| ||||| |||||  ||||||| |||||||||| |||| |||||||||||||    
T  38671041 caacattcatggacctaggagacataacattgctatgcataactctttagactctatgtaga 38670980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 39583475 - 39583333
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    ||||||||||||||||||| | | |||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||    
T  39583475 attacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacc 39583376  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatg 199  Q
    || ||||||  |||||| ||||||| |||||||| ||||||||    
T  39583375 taggagacatgacattgctatgcatgaccctttgaactctatg 39583333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 53785570 - 53785716
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| |||||| ||| |||    
T  53785570 attatttacacttgaatagaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacc 53785669  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||||||||    
T  53785670 taggagacatgacattgctatgcatgaccttttgaactctatgtaga 53785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 32546656 - 32546802
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||| |||    
T  32546656 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacc 32546755  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||  ||||||| ||  |||| ||||||||||||    
T  32546756 taggagacatgacattactatgcatgactttttgaactctatgtaga 32546802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 44198627 - 44198774
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtac 157  Q
    ||||| |||||| ||||||| ||| ||||||||||||||||  | ||||  ||||||||||||||||||||||||  ||| |||||||||||| ||| ||    
T  44198627 tattatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacacaacattcatggac 44198726  T
Q  158 ctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||| ||||||  |||||| ||||||||||| | || ||||||||||||    
T  44198727 ctaggagacatgacattgctatgcataaccttctgaactctatgtaga 44198774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 13582415 - 13582517
Alignment:
Q  103 cgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgt 200  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||| |||  |||| ||||||  |||||||||||||| ||| |||| ||||| |||    
T  13582415 cgctaggcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctaggagacatgacattgttatgcatgaccttttgaactctctgt 13582514  T
Q  201 aga 203  Q
    |||    
T  13582515 aga 13582517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 26276500 - 26276577
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||| ||| |||||    
T  26276500 aagcgggcaacaagctacaccgctagatctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 26856977 - 26856862
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||||| ||| || ||||||||| ||  ||||| ||||||  |||||| ||||||| |||||    
T  26856977 caacaagctgcgccgctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctaggagacatgacattgctatgcatgaccct 26856878  T
Q  188 ttggactctatgtaga 203  Q
    ||| ||||||||||||    
T  26856877 ttgaactctatgtaga 26856862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 52412086 - 52411991
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||||||||||||||||||| | |||||||||| |||||||   ||| ||||||  |||||||||||||| |||||||| ||||||||||||    
T  52412086 cctttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatgacattgttatgcatgaccctttgaactctatgtaga 52411991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 46941019 - 46940873
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||||||||||| |||||| | | ||||||| | | |||||||  ||||||||||  |||||||||| ||||||||||||||||| ||| |||    
T  46941019 attaattacacatgaatagaaggtaaacaggcaacaagttgcaccgctaggtctttttggataacaaaatcaattttcgtaaacacaacattcatgaacc 46940920  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||| ||  |||||||  ||||| | |||||| ||||||||||||    
T  46940919 tatgagtcatgacattgtcgtgcatgatcctttgaactctatgtaga 46940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 50657235 - 50657320
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaa 141  Q
    ||||||||||||||||||||| |||  |||| |||||||| ||||| ||||||| ||||||| || |||||| |||||||||||||    
T  50657235 aatattacttacacatgaatatgagacaagctgacaacaaactacgtcgctagatctttttgaatagcaaaaccaatcttcgtaaa 50657320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 44694 - 44843
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac---acaacatttatgt 155  Q
    |||| |||||| ||||||| ||| |||||| |||||| || ||||||||||||||||||||||||||||  |||| | || |||   |||||||| |||     
T  44694 attatttacacttgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaacaaatccttgtgaacacaacaacattcatgg 44793  T
Q  156 acctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| || |||  |||||| ||||||| ||| |||| ||||||||||||    
T  44794 acctaggaaacatgacattgctatgcatgaccttttgaactctatgtaga 44843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 38145969 - 38146063
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| |||| ||||||||||| ||||||||||||| || ||| ||||| ||||||  |||||||||||||| |||||||| |||||| |||||    
T  38145969 ctttttagatgacaaaatcaatcatcgtaaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaactctaagtaga 38146063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 4669885 - 4669788
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatg 178  Q
    |||||| ||||||||| |||||| | ||||||||||||  ||||||||||| |||||||||||||||| ||| ||| | ||||||  |||||||||||    
T  4669885 aagcgggcaacaagctgcgccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatgacattgttatg 4669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 38978994 - 38978899
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||||||||  ||| ||||||||||||||||| ||  ||||| ||||||  |||||||||||||| ||| |||| ||| ||||||||    
T  38978994 cctttttggatggcaaaactaattttcgtaaacacaacattgataaacctatgagacatgacattgttatgcatcaccttttgaactatatgtaga 38978899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 49017827 - 49017919
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||| |||||| ||||||| ||| |||||||||||||||| | ||||     ||||||||||||||||||||||| || |||||||||||||    
T  49017827 tattatttacacttgaatagaaggcaagcggacaacaagctgcaccgccgatactttttggatggcaaaatcaatcctcataaacacaacatt 49017919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 4764038 - 4763893
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||| | |||| | |  ||||||||||||||||    |||| |||||||||||||||| ||| |||    
T  4764038 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccaccaagcctttttggatggcaattctaatcctcgtaaacacaacattcatggacc 4763939  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
     | ||||||  |||||| ||||||||||| |||| ||||||||||||    
T  4763938 -aggagacatgacattgctatgcataaccttttgaactctatgtaga 4763893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 37133217 - 37133099
Alignment:
Q  87 ggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataac 184  Q
    ||||||||| || ||||||||||||||||||||| |||||| ||||| |  ||||||||||||| ||  || || ||||||  |||||| ||||||| ||    
T  37133217 ggacaacaaactgcgccgctagacctttttggatcgcaaaaccaatccttataaacacaacattcattaacttaggagacatgacattgctatgcatgac 37133118  T
Q  185 cctttggactctatgtaga 203  Q
    | || | ||||||||||||    
T  37133117 ctttagaactctatgtaga 37133099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 52741758 - 52741612
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| |||  ||||| ||| ||| | || |||||||||||||||||||||||||  ||||||||| || |||| ||  ||| | |    
T  52741758 attatttacacttgaatagaaggcgagcgggcaataagttgcgtcgctagacctttttggatggcaaaacaaatcttcgtgaatacaagataaatggatc 52741659  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||||||||    
T  52741658 taggagacatgacattgctatgcatgaccttttgaactctatgtaga 52741612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 8592002 - 8592076
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    ||||||||||||||||||  ||| ||| ||  |||||||| ||||||| | ||||||||||||||||||||||||    
T  8592002 attacttacacatgaatataaggcaagtgggtaacaagctgcgccgctgggcctttttggatggcaaaatcaatc 8592076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 5338552 - 5338657
Alignment:
Q  104 gctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgta 201  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||   |  ||||| ||||||  |||||| || |||| ||| |||| ||||||||||    
T  5338552 gctagaccattttggatggcaaaaccaatcctcgtaaacacaacat---tcgacctatgagacaagacattgctacgcatgaccttttgaactctatgta 5338648  T
Q  202 gattgtcaa 210  Q
    || ||||||    
T  5338649 gaatgtcaa 5338657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 4472923 - 4473031
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    ||||||||||||||||||| ||  ||||||| |||||||||   |  ||||| |||||||||| ||||| ||||  |||||||||||| ||| ||  |||    
T  4472923 attacttacacatgaatagaagacaagcggataacaagctatatcattagacttttttggatgacaaaaccaattctcgtaaacacaatattcatagacc 4473022  T
Q  159 taagagaca 167  Q
    || ||||||    
T  4473023 taggagaca 4473031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 53502636 - 53502592
Alignment:
Q  123 caaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||||    
T  53502636 caaaatcaattttcgtaaacacaacattcatgcacctaagagaca 53502592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 3643014 - 3643145
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||||  ||||| ||| |||||| ||| ||||| || || ||| |||||| ||||| ||||||||||| ||  |||||||||||| ||| |||    
T  3643014 attaattacacaataatagaaggcaagcgggcaataagctgcgtcgttaggccttttcggatgacaaaatcaatcatc--aaacacaacattcatggacc 3643111  T
Q  159 taagagaca--acattgttatgcataaccctttg 190  Q
    ||| | |||  |||||||||||||| | ||||||    
T  3643112 taaaaaacatgacattgttatgcatgatcctttg 3643145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 7502037 - 7502002
Alignment:
Q  211 aacacgctttctcatgtttgaccattttacttgaca 246  Q
    |||||||||||||||||||||||| |||||||||||    
T  7502037 aacacgctttctcatgtttgaccactttacttgaca 7502002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 26856802 - 26856755
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttga 244  Q
    |||| |||||||| |||||||||| |||| ||||||||||||||||||    
T  26856802 atgttgattgtcacaacacgctttatcatatttgaccattttacttga 26856755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 2601689 - 2601778
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaac 147  Q
    ||||| |||||||||||||| ||  || ||||||||||||| |  || ||||| ||||    |||||||||||||| |||||||||||||    
T  2601689 tattaattacacatgaatagaagacaaacggacaacaagctgcatcgttagactttttacagtggcaaaatcaatcctcgtaaacacaac 2601778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 38670920 - 38670872
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgaca 246  Q
    |||| |||||||| ||||||||||||||||||||| || |||||||||||    
T  38670920 atgttgattgtcagaacacgctttctcatgtttga-cactttacttgaca 38670872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 26393889 - 26393841
Alignment:
Q  102 ccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||| ||||| |||||||| || ||||||| ||||||||||||||||    
T  26393889 ccgctaaaccttgttggatggaaatatcaatcctcgtaaacacaacatt 26393841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 26772825 - 26772881
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||| ||||| ||||||| ||| ||| ||||||||||||||    
T  26772825 atgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttt 26772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 37133039 - 37132991
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| ||||||||||||||||||| |||| ||| ||||||    
T  37133039 atgttgattgtcagaacacgctttctcatgtttaaccactttgcttgac 37132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 39583269 - 39583221
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  39583269 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgac 39583221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 44198834 - 44198890
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||| ||| |||||||||||||||||||| ||| ||| |||||| |||||||    
T  44198834 atgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 44198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 51234587 - 51234623
Alignment:
Q  167 aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  51234587 aacattgttatgcataaccttttgaactctatgtaga 51234623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 39434514 - 39434674
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    |||||| ||||| ||||||||||||||||||||||||||   ||   ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  39434514 aatatttactatcaatattacttacacatgaataggaggc--gctagcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaac 39434611  T
Q  143 acaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||| ||| | ||||||||||  |||||| |||||||||||||||||||||||||||||    
T  39434612 acaacattcatggatctaagagacattacattgatatgcataaccctttggactctatgtaga 39434674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 42659073 - 42659230
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| ||  ||| |||||||||||||||| |||||| |||| |||||||||    
T  42659073 atatttactatcaatattacttacacaagaataggaggcaagcggacaacaagttataccgttagacctttttggatgacaaaattaatcctcgtaaaca 42659172  T
Q  144 caacatttatgtacct--aagagacaacattgttatgcataaccctttggactctatg 199  Q
    ||||||| ||| ||||  |||| | || |||| ||||||||||||||| |||||||||    
T  42659173 caacattcatgaacctagaagacataatattgctatgcataaccctttagactctatg 42659230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 38815159 - 38815301
Alignment:
Q  63 cttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaag 162  Q
    ||||||||||||||| ||| |||||| ||||||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||||||| ||| ||||| |    
T  38815159 cttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctagg 38815258  T
Q  163 agaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||  |||||| ||||||| |||||||| ||||||||||||    
T  38815259 agacatgacattgctatgcatgaccctttgaactctatgtaga 38815301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 22589582 - 22589438
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||  ||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||  |||    
T  22589582 attatttacacttgaataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagacc 22589483  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgta 201  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||||||    
T  22589482 tatgagacatgacattgctatgcatgaccttttgaactctatgta 22589438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 37514106 - 37514228
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatgca 180  Q
    |||||| ||||||||| ||||| ||||||||||||| |||||| ||||||| |||| || |||||||| ||| |||||||||||  ||||||| ||||||    
T  37514106 aagcgggcaacaagctgcgccgttagacctttttgggtggcaagatcaatcctcgtgaatacaacattcatggacctaagagacgtaacattgatatgca 37514205  T
Q  181 taaccctttggactctatgtaga 203  Q
    | ||| |||| ||||||||||||    
T  37514206 tgaccttttgaactctatgtaga 37514228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 3187878 - 3187976
Alignment:
Q  106 tagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||||||||||||||||| ||||  |||||||||||||||| ||| ||||| |||||  ||||||| ||||||||||||||| |||||||||||||    
T  3187878 tagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgctatgcataacccttt-gactctatgtaga 3187976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 18804474 - 18804619
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||| | ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||  | || |||    
T  18804474 attatttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaaca-ctctgaacc 18804572  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||| ||  |||||||||||||| ||| |||| | ||||||||||    
T  18804573 taggagtcatgacattgttatgcatgaccttttgaaatctatgtaga 18804619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 18596845 - 18596759
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacaca 145  Q
    |||| |||||| ||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||||||    
T  18596845 attatttacacttgaatagaaggcaagctgacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtgaacaca 18596759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 44337198 - 44337268
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaa 127  Q
    |||||||||||||||||||||||||| |||||  |||||||||  |||||| ||||||||||||||||||||    
T  44337198 aatattacttacacatgaataggaggcaagcgagcaacaagct-ggccgctggacctttttggatggcaaaa 44337268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 3821148 - 3821231
Alignment:
Q  122 gcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||| ||||||| ||||||||| |||||||||| ||||| ||||||  |||||| ||||||| |||||||| ||||||||||||    
T  3821148 gcaatatcaatcctcgtaaacataacatttatgaacctaggagacatgacattgctatgcattaccctttgaactctatgtaga 3821231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 8619886 - 8619937
Alignment:
Q  202 gattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  8619886 gattgtcaaaatacgctttttcatgtttgaccattttacttgacgcaacttt 8619937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 25022052 - 25021927
Alignment:
Q  67 cacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac 166  Q
    ||||||||||| ||| || |  ||||||||||||| |||||||  ||||||||||  |||||||||| | ||||||||||||||  || ||||| ||||     
T  25022052 cacatgaatagaaggcaaacaaacaacaagctacgtcgctagaattttttggatgataaaatcaatcattgtaaacacaacattcctggacctaggagat 25021953  T
Q  167 a--acattgttatgcataaccctttg 190  Q
    |  |||||||| ||||| ||||||||    
T  25021952 atgacattgttgtgcatgaccctttg 25021927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 8882236 - 8882313
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||| ||||| || || ||||| ||||||||||| |||| |||||||||||||||| ||| ||||| ||||||    
T  8882236 caacaagctgcgccgttaaacattttttgatggcaaaattaatcctcgtaaacacaacattcatggacctaggagaca 8882313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 24320229 - 24320289
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||||| | | |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  24320229 caacaagctgcactgctagacctttttggatatcaaaatcaatcctcgtaaacacaacatt 24320289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 8619683 - 8619774
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||||||||||  || ||||||||||| ||||| |   | ||| |||||||| | ||||||||||||| ||||||||||||||||    
T  8619683 attaattacacatgaataaaagttaagcggacaataagctgcattgttaggcctttttgaaaggcaaaatcaatcgtcgtaaacacaacatt 8619774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 24350963 - 24350880
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaac 147  Q
    |||||||||||||| || ||||||| ||||| |||  ||| |||| | |||||||| ||||||| ||||| |||||||||||||    
T  24350963 ttacacatgaatagaagataagcgggcaacaggctgggccactaggcttttttggagggcaaaaccaatcctcgtaaacacaac 24350880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 6592479 - 6592545
Alignment:
Q  101 gccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    |||||||||||||| |||||| ||||| ||||  |||||||||||||||| ||| ||||| ||||||    
T  6592479 gccgctagacctttctggatgacaaaaccaatactcgtaaacacaacattcatgaacctatgagaca 6592545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 25326159 - 25326207
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggaca 91  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||||    
T  25326159 aatatttactatcaatattacttacacatggataggagataagcggaca 25326207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 39434734 - 39434790
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| |||||| |||||||    
T  39434734 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 39434790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 500103 - 500194
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||| ||||||| ||| |||||| ||| |||||  ||||  |  |||||||| |||| |||||||||| ||||||||||||||||    
T  500103 attatttacacttgaatagaaggcaagcgggcaataagctgtgccgtcaagcctttttgaatggtaaaatcaatcctcgtaaacacaacatt 500194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 8540574 - 8540531
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatg 154  Q
    |||||||||||  |||||||||| ||||||||||||||||||||    
T  8540574 ctttttggatgataaaatcaatcatcgtaaacacaacatttatg 8540531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 24124889 - 24125035
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| ||||||  || ||||| |||||| |  | |||  |||||||||||  |||| | |||||||||||||| ||| |||    
T  24124889 attatttacacttgaatagaaggcaagcggcaaaaaagctgcgccgccaagcttttacggatggcaaaactaatccttgtaaacacaacattcatggacc 24124988  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||| ||||||||    
T  24124989 tatgagacatgacattgctatgcatgaccttttgaactttatgtaga 24125035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 4699763 - 4699833
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    ||||||||| |||| |||  ||||||||||||||||||  |||| | |||||||||||||| ||| |||||    
T  4699763 caacaagctgcgccactaagcctttttggatggcaaaactaatccttgtaaacacaacattcatggaccta 4699833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 6792172 - 6792238
Alignment:
Q  101 gccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||| |||| | |||| ||||| |||| ||||||||||||||||||||| || || ||||||    
T  6792172 gccgctagatctttcttgatgacaaaaccaatattcgtaaacacaacatttatggacttatgagaca 6792238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 9259485 - 9259447
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  9259485 tttttggatgacaaaatcaatcttcgtaaatacaacatt 9259447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 24451010 - 24451105
Alignment:
Q  86 cggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcat 181  Q
    ||||||| ||||| ||||||||||  |||| ||||||||||| ||||| |||| ||||||||||| ||| ||||| ||||||  |||||| |||||||    
T  24451010 cggacaataagctgcgccgctagatatttt-ggatggcaaaa-caatcatcgtgaacacaacattcatggacctaggagacatgacattgctatgcat 24451105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 15566139 - 15566208
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaa 127  Q
    ||||| |||||  ||||||| | | |||||| |||||| ||| |||||||||| ||||||||||||||||    
T  15566139 tattatttacatttgaatagaatgcaagcgggcaacaaactatgccgctagacttttttggatggcaaaa 15566208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 500294 - 500350
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||| ||||||||||||| ||| ||| |||||| |||||||    
T  500294 atgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttt 500350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 6618178 - 6618254
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||  |||| |||| ||||||||||| ||||| ||||  ||||||||| |||||| ||| ||||| ||||||    
T  6618178 aacaagctgtgccgttagatctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagaca 6618254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 35740026 - 35739970
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| ||| |||||||||||||||| ||| ||| ||| ||||||||||    
T  35740026 atgttgattgtcagaacccgctttctcatgtttggccactttgcttaacacaacttt 35739970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 45003145 - 45003007
Alignment:
Q  57 atattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgta 156  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  45003145 atattacttacacatgaataggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggt 45003046  T
Q  157 cctaagagac--aacattgttatgcataaccctttggac 193  Q
    |||| |||||  ||||||| |||||||||| ||||||||    
T  45003045 cctatgagacataacattgctatgcataactctttggac 45003007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 28517547 - 28517387
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||| ||||| |||||||||||||||||||||||||| |  ||| |||||||||  | |||||||| |||||||||||||||| ||||| ||||||||||    
T  28517547 tatttactatcaatattacttacacatgaataggaggcagacgggcaacaagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacac 28517448  T
Q  145 aacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| ||| || || |||||  |||||||||||||||||||||||||||||||||||||    
T  28517447 aacattcatggacttaggagacataacattgttatgcataaccctttggactctatgtaga 28517387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 40726725 - 40726580
Alignment:
Q  60 ttacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacct 159  Q
    |||||||||||||||||||||| |||||| ||||||||| ||  | ||||| |||||||||||||||||||||| || ||||||||||||| ||| | ||    
T  40726725 ttacttacacatgaataggaggcaagcgggcaacaagctgcgatgttagacatttttggatggcaaaatcaatcctcataaacacaacattcatggatct 40726626  T
Q  160 aagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | |||||  | |||||||||||||||||||||||||||||||||||    
T  40726625 aggagacatagcattgttatgcataaccctttggactctatgtaga 40726580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 5825120 - 5825280
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||||||||| |||||| ||||||||||||||||||| |||| |  |||||||| |||||  |||||||||| |||||||||| ||||| ||||||||||    
T  5825120 tattaactatcaatatttcttacacatgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacac 5825219  T
Q  145 aacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||  ||  ||||| |||||  ||||||| ||||||||||||||| |||||||||||||    
T  5825220 aacatccatagacctaggagacataacattgctatgcataaccctttcgactctatgtaga 5825280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 21327084 - 21326940
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||| |||    
T  21327084 attatttacacttgaatagaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacc 21326985  T
Q  159 taagagac--aacattgttatgcataaccctttggactctatgta 201  Q
    || |||||  ||||||| ||||||| ||| |||| ||||||||||    
T  21326984 taggagacataacattgctatgcatgaccttttgaactctatgta 21326940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 1249618 - 1249701
Alignment:
Q  162 gagacaacattgttatgcataaccctttggactctatgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||    
T  1249618 gagacaacattgttatgcataaccctttggactctatgtggattatcaaaacacgctttctcatgtttgaccactttatttgac 1249701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 45614076 - 45613942
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagaga--caa 168  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| ||||| ||||    |    
T  45614076 tgaatagaaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagatttga 45613977  T
Q  169 cattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||| | | |||| ||||||||||||    
T  45613976 cattgttatgcatgaacttttgaactctatgtaga 45613942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 38766176 - 38766258
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaat 132  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||| ||||    
T  38766176 actatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaaccaat 38766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 38832154 - 38832225
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatg 121  Q
    ||||| ||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  38832154 actatcaatattacttacatatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatg 38832225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 48539094 - 48539188
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||| ||||| ||||||  |||||| ||||||| ||| |||||||||||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttggactctatgtaga 48539188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 19277164 - 19277300
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttc--gtaaacacaacatttatgtacctaagagaca- 167  Q
    ||||||| ||| | |||| ||| ||||| |||||||||||||||||||||||||||| |||| |||  || ||||||||||| ||| ||||| ||||||     
T  19277164 tgaatagaaggcaggcgggcaataagctgcgccgctagacctttttggatggcaaaaccaattttcgtgtgaacacaacattcatggacctaggagacat 19277263  T
Q  168 -acattgttatgcataaccctttggactctatgtaga 203  Q
     |||||| ||||||| ||| |||| ||||||||||||    
T  19277264 gacattgctatgcatgaccttttgaactctatgtaga 19277300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 45974845 - 45974737
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||  |||||||||||||||| |||| ||||||||||||||||| ||||||  ||| | |||||||||||||| ||| |||    
T  45974845 attatttacacttgaatagaagacaagcggacaacaagctgcgccactagacctttttggatgacaaaatttatccttgtaaacacaacattcatgaacc 45974746  T
Q  159 taagagaca 167  Q
    || ||||||    
T  45974745 taggagaca 45974737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 25187177 - 25187031
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||||| |||||||||| |||||| ||||| |||||||||| | |  ||||||||||| ||| | |    
T  25187177 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagatctttttagatggtaaaatcaatcattgggaacacaacattcatggatc 25187078  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||| ||||    
T  25187077 taggagacatgacattgctatgcatgaccttttgaactctatataga 25187031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 36931963 - 36931887
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatg 121  Q
    ||||| ||||| ||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| |||||||||||    
T  36931963 atatttactatcaatattacttacatatgaataggaggcaagcggataacaagctgcgccgctaga-ctttttggatg 36931887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 1249560 - 1249620
Alignment:
Q  20 tattccatagttgttaaccataaaatattaactattaatattacttacacatgaataggag 80  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||    
T  1249560 tattccatagttgttaaccataaaatatttactatcaatattacttacatataaataggag 1249620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 23037457 - 23037559
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtagattgt 207  Q
    ||||||| |||||||||||||||| |||||||||||| ||| ||  |||||||||| |  |||||| |||||||||||||||| || ||| |||||| ||    
T  23037457 cctttttagatggcaaaatcaatcctcgtaaacacaaaattcatagacctaagagaaatgacattgctatgcataaccctttgaaccctacgtagatggt 23037556  T
Q  208 caa 210  Q
    |||    
T  23037557 caa 23037559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 27521385 - 27521478
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||||||||||||| |||||||||||||||| ||  || || ||||||  |||||||||||||| ||| |||| ||||||||||||    
T  27521385 tttttcgatggcaaaatcaatcctcgtaaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtaga 27521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 982841 - 982956
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    |||||||||  | ||||||||||||||||||||||| | ||||| |||| ||||||||||| ||| || ||  |||||  |||||| ||||||| ||| |    
T  982841 caacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaacattcatggacatagaagacatgacattgatatgcatgacctt 982940  T
Q  188 ttggactctatgtaga 203  Q
    ||| ||||||||||||    
T  982941 ttgaactctatgtaga 982956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 27027844 - 27027768
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    |||||||||| |||||||| |||||||||| |||||| ||||| |||| ||||||||||| ||| ||||| ||||||    
T  27027844 aacaagctacaccgctagatctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctaggagaca 27027768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 4501120 - 4501266
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||  ||| |||||||||| ||| | ||| ||||||||||||| |||| ||||   |||| |||||||||||||||| ||| | |    
T  4501120 attatttacacttgaatataaggcaagcggacaataagatgcgctgctagacctttttagatgacaaagctaatcctcgtaaacacaacattcatgaatc 4501219  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| | | |||| ||||||||||||    
T  4501220 taggagacatgacattgctatgcatgaacttttgaactctatgtaga 4501266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 24527482 - 24527596
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctt 188  Q
    |||||||| |||||||||| ||||||||||| ||||| ||||| |||| || |||||||| ||| ||| | |||| |  |||||| ||||||| ||| ||    
T  24527482 aacaagctgcgccgctagatctttttggatgacaaaaccaatcctcgtgaatacaacattcatggaccaaggagaaatgacattgctatgcatgaccttt 24527581  T
Q  189 tggactctatgtaga 203  Q
    || ||||||||||||    
T  24527582 tgaactctatgtaga 24527596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 43856788 - 43856881
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||| |||||||||||  ||||||||| |||||| ||| ||||| ||| ||  |||||||| ||||| |||||||| ||||||||||||    
T  43856788 tttttggatagcaaaatcaattctcgtaaacataacattcatggacctaggagtcatgacattgttgtgcatgaccctttgaactctatgtaga 43856881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 30216098 - 30216050
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  30216098 atgttgattgtcaaaacacgctttctcatatttgaccattttgcttgac 30216050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 2904242 - 2904332
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||||||||||| ||  |  | |||||||||||||||| ||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  2904242 attaattacacatgaatagaagacatacagacaacaagctacgccacta-acctttttggatagcaaaaccaattatcgtaaacacaacatt 2904332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 10904979 - 10905125
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||||||||||| | | ||| ||  |||||||| |||  ||||  ||||||||||||  | ||||||| | |||||||| ||||| ||| |||    
T  10904979 attatttacacatgaatagaatgcaagagggtaacaagctgcgctactaggtctttttggatggtcagatcaatccttgtaaacacgacattcatggacc 10905078  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  ||||||||||||||  | ||||| ||||||||||||    
T  10905079 taggagacatgacattgttatgcatggctctttgaactctatgtaga 10905125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 32584485 - 32584552
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||| | ||||| | ||| ||||| ||||||||||||| |||||||||||| ||||||||||||||    
T  32584485 aagcgggcgacaagttgcgctgctaggcctttttggatggtaaaatcaatctttgtaaacacaacatt 32584552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 25186962 - 25186920
Alignment:
Q  211 aacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  25186962 aacacgctttctcatgttagaccactttacttgacacaacttt 25186920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 38839234 - 38839311
Alignment:
Q  106 tagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcat 181  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||| ||| |||| | | |||  ||||||||||||||    
T  38839234 tagacatttttggatggtaaaaccaatcttcgtaaacacaacattcatggacctgataaacatgacattgttatgcat 38839311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 41117975 - 41117870
Alignment:
Q  100 cgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactcta 197  Q
    ||||||| ||| ||||||||| |||||||||||| |||| ||||||||||| ||| ||||| || |||  |||||| ||||||| | | |||  ||||||    
T  41117975 cgccgctggacttttttggatagcaaaatcaatcatcgtgaacacaacattcatggacctaggaaacatgacattgctatgcatgatcttttaaactcta 41117876  T
Q  198 tgtaga 203  Q
    ||||||    
T  41117875 tgtaga 41117870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 2520967 - 2520918
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctag 108  Q
    |||| |||||||||||||| ||| |||||||||||||||| |||||||||    
T  2520967 attaattacacatgaatagaaggcaagcggacaacaagctgcgccgctag 2520918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 5714954 - 5715022
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatg 178  Q
    ||||| |||| ||||| |||||||| ||||||||||||||||| ||||| |||||  ||||||||||||    
T  5714954 tttttagatgacaaaaccaatcttcataaacacaacatttatggacctaggagacataacattgttatg 5715022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 32336318 - 32336359
Alignment:
Q  109 acctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  32336318 acctttttggatggcaaaatcaatctttgtgaacacaacatt 32336359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 22197899 - 22197993
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||||||| ||||||||||  |||||||||||||||| ||  ||||| ||||||  || ||| ||| ||||||| |||| ||||||||||||    
T  22197899 cctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatgtaga 22197993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 22239922 - 22239828
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||||||| ||||||||||  |||||||||||||||| ||  ||||| ||||||  || ||| ||| ||||||| |||| ||||||||||||    
T  22239922 cctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatgtaga 22239828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 41071800 - 41071756
Alignment:
Q  106 tagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||    
T  41071800 tagatctttttggatgacaaaatcaatcttcgtaaacataacatt 41071756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 34856750 - 34856813
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    ||||||| || ||| | ||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  34856750 aagcggataataagttgcgccgctagacctttttagatgacaaaatcaatctcagtaaacacaa 34856813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 24567002 - 24566960
Alignment:
Q  202 gattgtcaaaacacgctttctcatgtttgaccattttacttga 244  Q
    ||||||| |||||| |||||||||||||||||| |||||||||    
T  24567002 gattgtctaaacaccctttctcatgtttgaccactttacttga 24566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 9281382 - 9281277
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| ||||| |||||||  |||||||| |||||||| || | ||| ||  ||||||||||| |||||| ||||  || ||||||||||||| ||| ||     
T  9281382 attaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggact 9281283  T
Q  159 taagag 164  Q
    ||||||    
T  9281282 taagag 9281277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 9292353 - 9292248
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| ||||| |||||||  |||||||| |||||||| || | ||| ||  ||||||||||| |||||| ||||  || ||||||||||||| ||| ||     
T  9292353 attaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggact 9292254  T
Q  159 taagag 164  Q
    ||||||    
T  9292253 taagag 9292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 21326878 - 21326830
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  21326878 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgac 21326830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 28517327 - 28517279
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| ||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  28517327 atgttgattgtctaaacacgctttctcatgtttggccactttgcttgac 28517279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 17249565 - 17249405
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  17249565 tatttactatcaatattacttatacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacac 17249466  T
Q  145 aacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| ||| || || |||||  ||||||| ||| ||||| |||||||||||||||||||    
T  17249465 aacattcatgaacttaggagacataacattgctatacataatcctttggactctatgtaga 17249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 33220966 - 33220811
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||  |||||||| ||||||    
T  33220966 actatcaatattacttacacatgaataggaggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaattatcgtaaacgcaacat 33220867  T
Q  150 ttatgtacct--aagagacaacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||| ||||  |||| ||||||||| |||||||||||||||||||| ||||||||    
T  33220866 tcatggacctagaagacacaacattgctatgcataaccctttggactatatgtaga 33220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 357965 - 357816
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    ||||||||||||| |||||||||||  || | |||||||||||| ||||||| || ||||| ||||||||||| ||||||||||||||||||||| |||     
T  357965 aatattacttacatatgaataggagacaaaccgacaacaagctatgccgctatacatttttagatggcaaaattaatcttcgtaaacacaacattcatgg 357866  T
Q  156 accta--agagacaacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||  ||||| ||||||| ||||| ||| | |||||||||||||||||    
T  357865 acctaggagagataacattgctatgcttaatcatttggactctatgtaga 357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 7749327 - 7749433
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| ||||||| |||||||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||    
T  7749327 atatttactatcaatattagttacacatgaataggaggcaagcgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatcctcgtaaaca 7749426  T
Q  144 caacatt 150  Q
    |||||||    
T  7749427 caacatt 7749433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 32115609 - 32115725
Alignment:
Q  89 acaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccc 186  Q
    |||||||| | | ||||||||||||||| ||| |||||||||||| |||||||||||||||| ||| ||||| ||||||  |||||||||||||| |||     
T  32115609 acaacaagttccaccgctagacctttttagatagcaaaatcaatcatcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgacct 32115708  T
Q  187 tttggactctatgtaga 203  Q
    |||| ||||| ||||||    
T  32115709 tttgaactctttgtaga 32115725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 34304399 - 34304503
Alignment:
Q  101 gccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctat 198  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||| ||  ||||| ||||||  | |||| |||||||||| |||||||||||||    
T  34304399 gccgctatacctttttggattgcaaaatcaatcctcgtaaatacaacattcatagacctatgagacatgatattgctatgcataactctttggactctat 34304498  T
Q  199 gtaga 203  Q
    |||||    
T  34304499 gtaga 34304503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 3137488 - 3137362
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaaga 163  Q
    |||||||||||| | ||| || ||| ||||||| | | | ||||  |||||||||||||||||| ||||| |||||||||||||||| ||| ||||| ||    
T  3137488 ttacacatgaatggaaggcaaacgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagga 3137389  T
Q  164 gaca--acattgttatgcataaccctt 188  Q
    ||||  |||||| ||||||| ||||||    
T  3137388 gacatgacattgctatgcatgaccctt 3137362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 28625827 - 28625883
Alignment:
Q  94 aagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  28625827 aagctgcgccgctagatctttttgaatggcaaaatcaatctccgtaaacacaacatt 28625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 34168782 - 34168872
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||||||||||| ||| |||||| | ||||| | ||||||||| ||||||||||| |||||| ||||| |||| |||||||||||    
T  34168782 attaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgt-aacacaacatt 34168872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 959493 - 959575
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta--agagacaacattgttatgcataaccctttg 190  Q
    ||||||| |||| ||||||||||| |||||||||||||||| ||| |||||  ||| ||||||||| ||||||| ||| ||||    
T  959493 cctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctaggagacacaacattgctatgcatgaccttttg 959575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 13398376 - 13398275
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtagattgtc 208  Q
    ||||||||||| ||||||||| | |||||||||||||||||||| | |||  || |   |||||||||||||| | | |||| |||||||||||| ||||    
T  13398376 ctttttggatgacaaaatcaaccatcgtaaacacaacatttatgcatctagaagtcgtgacattgttatgcatcatcttttgaactctatgtagaatgtc 13398277  T
Q  209 aa 210  Q
    ||    
T  13398276 aa 13398275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 28009228 - 28009100
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaaga 163  Q
    |||||||||||||| ||| || ||||||| ||||| || || ||| ||||||||||| |||||||||||  | ||||| ||||| || ||| ||||| ||    
T  28009228 ttacacatgaatagaaggcaaacggacaataagctgcgtcgttaggcctttttggattgcaaaatcaattctggtaaagacaacgttcatggacctagga 28009129  T
Q  164 gaca--acattgttatgcataaccctttg 190  Q
    | ||  |||||||| || || ||||||||    
T  28009128 gtcatgacattgttgtgtatgaccctttg 28009100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 45867 - 45816
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagac 110  Q
    |||| |||||| ||||||||||| |||||| ||||||||| |||||||||||    
T  45867 attatttacacttgaataggaggcaagcgggcaacaagctgcgccgctagac 45816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 32531109 - 32531042
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacc 111  Q
    ||||| ||||| ||||||||||||||||||||| |||  | || ||||||||||| | ||||||||||    
T  32531109 atatttactatcaatattacttacacatgaatatgagacacgcagacaacaagctgcaccgctagacc 32531042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 749562 - 749501
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaat 132  Q
    ||||||| ||| ||||||||||||||||  | ||  |||| |||||||||||||||||||||    
T  749562 tgaatagaaggcaagcggacaacaagctgtgtcgtcagacgtttttggatggcaaaatcaat 749501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 4166114 - 4166022
Alignment:
Q  113 ttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||||| ||||| |||||||||| | ||||||  ||||| | ||||  ||||||| |||||| ||| |||  ||||||||||||    
T  4166114 ttttggatggcaaaaccaatcctcgtaaacactatatttattgacctaggtgacatgacattgtcatgcatgaccttttaaactctatgtaga 4166022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 4206788 - 4206696
Alignment:
Q  113 ttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||||||||||| ||||| |||||||||| | ||| ||  ||||| | ||||  ||||||| |||||| ||| |||| ||||||||||||    
T  4206788 ttttggatggcaaaaccaatcctcgtaaacactatattcattgacctaggtgacatgacattgtcatgcatgaccttttgaactctatgtaga 4206696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 34554476 - 34554435
Alignment:
Q  105 ctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    |||| |||||||||||| ||||||||||| ||||||||||||    
T  34554476 ctaggcctttttggatgacaaaatcaatcctcgtaaacacaa 34554435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 24016404 - 24016460
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||| | |||| ||||||||||||||||| |||||||||||  |||||||    
T  24016404 atgttgattgtgagaacaagctttctcatgtttgactattttacttgatgcaacttt 24016460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 29338294 - 29338179
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    ||||||||| | | ||||| || |||||||| | |||||||||| | |||||||||||||| ||| ||||| ||| ||  |||||| | ||||| |||||    
T  29338294 caacaagctgcactgctaggccattttggatagaaaaatcaatccttgtaaacacaacattcatggacctaggagtcatgacattgatgtgcatgaccct 29338195  T
Q  188 ttggactctatgtaga 203  Q
    ||| ||  ||||||||    
T  29338194 ttgaaccatatgtaga 29338179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 34644413 - 34644573
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||| ||||| |||||||  || |||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||| ||||||||||    
T  34644413 tatttactatcaatattatatatacataaataggaggtaagcgggcaacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacac 34644512  T
Q  145 aacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| ||| ||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  34644513 aacattcatggacctaggagacataacattgatatgcataaccctttggactctatgtaga 34644573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 5453942 - 5454060
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||| ||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||| ||||| | ||||||||    
T  5453942 tatttactatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacac 5454041  T
Q  145 aacatttatgtacctaaga 163  Q
    |||||| ||| ||||||||    
T  5454042 aacattcatggacctaaga 5454060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 48841337 - 48841182
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| ||||||||| |||||||||||| ||||||||| || ||    
T  48841337 actattaatattacttacacatgaatatgaggtaagcggacaacaagttgcgctgctagacttttttggattgcaaaatcaatcctcgtaaacataatat 48841238  T
Q  150 ttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||  |  || |||||  |||||| ||||||||||| |||| |||||||||||||    
T  48841237 tcatagatttaggagacataacattattatgcataactctttagactctatgtaga 48841182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 2764372 - 2764486
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatgcataaccctt 188  Q
    |||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||  ||||||| | ||||||||||||    
T  2764372 aacaagctgcgccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacattgatttgcataaccctt 2764471  T
Q  189 tggactctatgtaga 203  Q
    |||||| ||||||||    
T  2764472 tggactttatgtaga 2764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 47459528 - 47459689
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    |||||| || || |||||| ||||||||||||||||||  |||| ||||||||||| ||| |||||||||||||| ||||| ||||||||  ||||||||    
T  47459528 aatatttacgatcaatattccttacacatgaataggagccaagcagacaacaagctgcgc-gctagacctttttgaatggctaaatcaattctcgtaaac 47459626  T
Q  143 acaacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||||||||  || || |||||  ||||||| ||||||||  |||||||||||||||||||    
T  47459627 acaacatttatagacttaggagacataacattgctatgcatattcctttggactctatgtaga 47459689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 22346756 - 22346902
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||  |||| |||| ||||||||||| ||  |||    
T  22346756 attatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatcctcgtgaacacaacattcataaacc 22346855  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||  ||||||| ||| |||| ||||| ||||||    
T  22346856 taggagacatgacatttctatgcatgaccttttgaactctgtgtaga 22346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 24177757 - 24177611
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||  |||||| ||||||||| | ||||||||||||||||| |||||||| ||||| |||| ||||||||||| ||| |||    
T  24177757 attatttacacttgaatagaagacaagcgggcaacaagctgcaccgctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacc 24177658  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || |||| |  |||||| ||||||| ||  |||| ||||||||||||    
T  24177657 taggagatatgacattgctatgcatgactttttgaactctatgtaga 24177611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 28493577 - 28493477
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||  || |||||||||| || |||||||||||||||||||||||||||||||||| |||| |||| |||||| ||| |||    
T  28493577 attatttacacttgaatagaagacaaacggacaacaaactgcgccgctagacctttttggatggcaaaatcaatcctcgtgaacataacattcatggacc 28493478  T
Q  159 t 159  Q
    |    
T  28493477 t 28493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 868647 - 868560
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    |||| |||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||| | || |||||||    
T  868647 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatccttgtgaacacaa 868560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 1114114 - 1114023
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||| ||||||| ||  |||||| |||||||||  |||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  1114114 attatttacacttgaatagaagccaagcgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 2898595 - 2898709
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctt 188  Q
    |||||||||||||||||  |||||||||||||||||||||||| || ||||||||||||| |||  | || ||||||  | |||||||||||| | | ||    
T  2898595 aacaagctacgccgctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatcgtatgagacatgatattgttatgcatgatcttt 2898694  T
Q  189 tggactctatgtaga 203  Q
    || ||||||||||||    
T  2898695 tgaactctatgtaga 2898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 21472864 - 21473010
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| | | |||||| ||| ||| | |||||||||||||||||||||||||||| || || || | ||| ||||||| ||| |||    
T  21472864 attatttacacttgaatagaatgcaagcgggcaataagttgcgccgctagacctttttggatggcaaaaccagtcctcctgaacgcaacattcatggacc 21472963  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||| ||||||| ||| |||| ||||||||||||    
T  21472964 taggagacatgacattgctatgcatgaccttttgaactctatgtaga 21473010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 28041349 - 28041227
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgca 180  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| || | | ||||||||| ||| || ||   ||||  |||||| ||||||    
T  28041349 aagcggacaacaagctccgccgctagacctttttggatggaaaaatcaatcctcatgagcacaacattcatggacttagaggacatgacattgctatgca 28041250  T
Q  181 taaccctttggactctatgtaga 203  Q
    | ||| |||| ||||||||||||    
T  28041249 tgaccttttgaactctatgtaga 28041227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 30688418 - 30688509
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| ||||||||||||||  || |||||| ||||||||| ||||||||| |||||||||||  ||||| ||||| ||||||||||||||||    
T  30688418 attaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacatt 30688509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 19035340 - 19035426
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacaca 145  Q
    |||| |||||| ||||||| ||| || ||||||||||||| |||||||||||||||||||||| ||||| ||||| |||| ||||||    
T  19035340 attatttacacttgaatagaaggcaatcggacaacaagctgcgccgctagacctttttggatgacaaaaccaatcctcgtgaacaca 19035426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 31737568 - 31737416
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| || | ||||||||||| |||||| |  |||||||||||||||||||||||| |||||||||| | ||| ||| | |    
T  31737568 attatttacacttgaatagaaggcaaacagacaacaagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaacacta-attcatggatc 31737470  T
Q  159 taagagac--aacattgttatgcataaccctttggactctatgtagattgtcaa 210  Q
    || || ||  ||||||| ||||||| ||| |||| |||||||||||| ||||||    
T  31737469 taggaaacataacattgatatgcatgaccttttgaactctatgtagaatgtcaa 31737416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 4611074 - 4611158
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||||||||||  || | |||||||||||||||| ||||||||||| |||| ||||||| ||| ||| ||||| ||||||    
T  4611074 aagcggacaacaagctgtgctgttagacctttttggatgacaaaatcaatcatcgtgaacacaatattcatggacctaggagaca 4611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 20260012 - 20259897
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    |||||| || |||||||||||||||||||||||||||| |||||    ||||||||||||||||  || || ||||||  |||||  ||||||| ||| |    
T  20260012 caacaaactgcgccgctagacctttttggatggcaaaaccaatccatataaacacaacatttattaacttatgagacatgacattactatgcatgacctt 20259913  T
Q  188 ttggactctatgtaga 203  Q
    ||| ||||||||||||    
T  20259912 ttgaactctatgtaga 20259897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 7213104 - 7213183
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgt 138  Q
    |||| |||||| ||||||| ||| |||||| ||||||| | ||||||||||||||||||||||| |||| ||||| ||||    
T  7213104 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggtaaaaccaatcatcgt 7213183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 4862234 - 4862089
Alignment:
Q  61 tacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaa-tcaatcttcgtaaacacaacatttatgtacct 159  Q
    ||||||||||||||||  | | ||  || ||||||||| ||||||||| ||||  |  ||||||||| |||||| |||||| ||||||||| ||| | ||    
T  4862234 tacttacacatgaatacaaagcaactgggcaacaagctgcgccgctaggccttcatatatggcaaaaatcaatcctcgtaatcacaacattcatggatct 4862135  T
Q  160 aagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||| |||   |||||||||||||| |||||||| ||||||||||||    
T  4862134 aagggacgtgacattgttatgcatgaccctttgaactctatgtaga 4862089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 4862022 - 4861973
Alignment:
Q  204 ttgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||||| || |||||||||||||||||||||||||||||||| |||||||    
T  4862022 ttgtcagaagacgctttctcatgtttgaccattttacttgacgcaacttt 4861973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 31742546 - 31742485
Alignment:
Q  72 gaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    |||||| ||||||| |||||||||| |||| |||| ||||||||| ||||||||||||||||    
T  31742546 gaatagaaggtaagaggacaacaagttacgtcgctggacctttttagatggcaaaatcaatc 31742485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 21473070 - 21473118
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  21473070 atgttgattgtcagaacacgctttctcatgtttggccattttacttgac 21473118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 45835380 - 45835341
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacatt 45835341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 36486958 - 36487000
Alignment:
Q  202 gattgtcaaaacacgctttctcatgtttgaccattttacttga 244  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  36486958 gattgtcaaaacacgctttctcatatttgaccactttacttga 36487000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 35387890 - 35387809
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacaca 145  Q
    |||||||||||||| ||  ||| |||||||||||||||||| || || |||||| ||| ||||| ||||| | |||||||||    
T  35387890 ttacacatgaatagaagacaagtggacaacaagctacgccgttaaacttttttgaatgacaaaaccaatcattgtaaacaca 35387809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 7483781 - 7483836
Alignment:
Q  95 agctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| ||||||||  ||||||| ||||||||||  |||||||||||||||||||||    
T  7483781 agctgcgccgctaagcctttttagatggcaaaactaatcttcgtaaacacaacatt 7483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 21934258 - 21934325
Alignment:
Q  79 aggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    |||||||| | ||||||||| ||||||||  |||||||||||||||||| ||||| || |||| ||||    
T  21934258 aggtaagcaggcaacaagctgcgccgctaaccctttttggatggcaaaaccaatcctcttaaatacaa 21934325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 17078031 - 17077966
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    |||||| || ||||| ||||| ||||| |||||||||| ||||| || | ||||||||||||||||    
T  17078031 caacaatctgcgccgttagacttttttagatggcaaaaccaatcatcatgaacacaacatttatgt 17077966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 6670351 - 6670208
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||||||||| || ||||| ||| ||| |||||||||| | |||  ||| |  ||||||||||||||||| |||  ||||||| | |||||| ||| | |    
T  6670351 attacttacatataaatagaaggcaagtggacaacaaggtgcgctactatatttttttggatggcaaaattaattatcgtaaatataacattcatgaatc 6670252  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgt 200  Q
    || |||| |  ||||||| |||||| || ||||| |||||||||    
T  6670251 taggagatatgacattgtaatgcatgactctttgaactctatgt 6670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 19035514 - 19035562
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  19035514 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgac 19035562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 22346962 - 22347018
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| ||||||||||||||| |||| ||| ||| ||||||| ||||||    
T  22346962 atgttgattgtcagaacacgctttctcatatttggccactttgcttgacataacttt 22347018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 29169833 - 29169777
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||| |||||| |||||| |||  |||||||||||||||||    
T  29169833 atgttgattgtcagaacacgttttctcgtgtttggccaccttacttgacacaacttt 29169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 34644633 - 34644689
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||||| |||||| |||||||||||||||||||| ||| |||  ||||| |||||||    
T  34644633 atgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttt 34644689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 45057585 - 45057629
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgta 156  Q
    |||||||||| ||||||||||| |  |||||||||||||||||||    
T  45057585 tttttggatgacaaaatcaatcattataaacacaacatttatgta 45057629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 50161457 - 50161401
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||| | |||||||||||||||||||| ||| ||| |||||| |||||||    
T  50161457 atgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttt 50161401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 35310295 - 35310455
Alignment:
Q  45 tattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||||||| || || || |||| |||||||||||||| ||||  ||||||||||    
T  35310295 tattaactatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacac 35310394  T
Q  145 aacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    |||||| ||| ||||| |||||  ||||||| |||||| ||||||||||||||||||||||    
T  35310395 aacattcatggacctaggagacataacattgatatgcaaaaccctttggactctatgtaga 35310455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 430454 - 430609
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    ||||| |||||||||| ||||||||||||||| |||| ||| ||||||| | ||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  430454 actatcaatattacttgcacatgaataggaggcaagcagacnacaagctgcaccgatagacctttttggatggcataatcaatcctcgtaaacacaacat 430553  T
Q  150 ttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||| ||||| |||||  ||||||  |||||||||||||||||| ||||||||||    
T  430554 tcatggacctaggagacataacattactatgcataaccctttggaatctatgtaga 430609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 13167159 - 13167010
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    ||||||| |||||||||||||||||| ||| || ||||||||| |||||||||| ||||||||||  || |||||||| |||||||| ||||||| |||     
T  13167159 aatattaattacacatgaataggaggcaagtgggcaacaagctgcgccgctagatctttttggataacagaatcaatcatcgtaaacccaacattcatgg 13167060  T
Q  156 acctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||  | ||||| |||||||||||||||||||||||||||||    
T  13167059 acctaggagacataccattgctatgcataaccctttggactctatgtaga 13167010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 33692301 - 33692155
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    |||||||||||||||||||||||||| |||| | ||||||||| |||||||||| |||||||||||| |||| |||   ||||||||| |||||| |||     
T  33692301 aatattacttacacatgaataggaggcaagcaggcaacaagctgcgccgctagatctttttggatggaaaaaccaa--atcgtaaacagaacattcatga 33692204  T
Q  156 acctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||  ||||||||||||||| ||||||||||| |||||||||    
T  33692203 acctatgagacataacattgttatgcat-accctttggacactatgtaga 33692155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 25663287 - 25663132
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacat 149  Q
    ||||| |||||||||||||||| || |||||| || ||  ||||||||| || || |||||||||||||||| ||||  ||||| |||||||| ||||||    
T  25663287 actatcaatattacttacacataaaaaggaggcaaacgagcaacaagctgcgtcgttagacctttttggatgacaaagccaatcctcgtaaactcaacat 25663188  T
Q  150 ttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    | ||| ||||| | |||  ||||||| |||||||||||||||||||||||||||||    
T  25663187 tcatggacctaggggacataacattgatatgcataaccctttggactctatgtaga 25663132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 27336540 - 27336684
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    |||||| ||||| |||||||||||||||||||||||||  |||||||||| || || | ||||||||||||||| |||||||||||||||| | |||||     
T  27336540 aatatttactatcaatattacttacacatgaataggagacaagcggacaataaactgcaccgctagaccttttttgatggcaaaatcaatccttgtaaaa 27336639  T
Q  143 acaacatttatgtacctaagagac--aacattgttatgcataacc 185  Q
    |||||||| ||| || || |||||  ||||||| ||| |||||||    
T  27336640 acaacattcatggacttaggagacataacattgctatacataacc 27336684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 2566310 - 2566195
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| ||||||  |||||| ||||||| ||| |    
T  2566310 caacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggagacatgacattgctatgcatgacctt 2566211  T
Q  188 ttggactctatgtaga 203  Q
    ||| ||||||||||||    
T  2566210 ttgaactctatgtaga 2566195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 2917616 - 2917539
Alignment:
Q  50 actattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaa 127  Q
    ||||| |||||||| ||||||||||||||||| |||| | |||||| || ||||||||||||||||||||||||||||    
T  2917616 actatcaatattacctacacatgaataggaggcaagcaggcaacaaactgcgccgctagacctttttggatggcaaaa 2917539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 42921559 - 42921704
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| ||| ||  |||||||| |||||||||| ||||||||||||||||| ||||| | |||||||||| | ||||| ||     
T  42921559 attatttacacttgaatagaaggcaagtgggaaacaagctgcgccgctagatctttttggatggcaaaaccaatccttgtaaacacaata-ttatggact 42921657  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||||||||||| ||| | || ||||||||||||    
T  42921658 taggagacatgacattgttatgcatgaccttctgaactctatgtaga 42921704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 23023460 - 23023589
Alignment:
Q  63 cttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaag 162  Q
    ||||||||| ||||  ||| || ||||||| ||| | |||| |||| |||||||||||| |||||||||||||||||||||||||||| ||  ||||| |    
T  23023460 cttacacataaataaaaggcaaacggacaataagatgcgcccctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctagg 23023559  T
Q  163 agaca--acattgttatgcataaccctttg 190  Q
    |||||  |||||| ||||||| ||| ||||    
T  23023560 agacatgacattgatatgcatgaccttttg 23023589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 32270045 - 32269910
Alignment:
Q  56 aatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgt 155  Q
    ||||||| |||||| ||||||| ||| ||||||  |||||||| | ||||||  | |||||||||||| ||||||||| |||||||||||||||| |||     
T  32270045 aatattatttacacttgaatagaaggcaagcgggtaacaagctgc-ccgctatgcttttttggatggcgaaatcaatcctcgtaaacacaacattcatgg 32269947  T
Q  156 acctaagagaca--acattgttatgcataaccctttg 190  Q
    ||||| ||||||  |||||| ||||||| ||| ||||    
T  32269946 acctaggagacatgacattgctatgcatgaccttttg 32269910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 35456023 - 35456079
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  35456023 atgttgattgttagaacacgctttctcatgtttgaccattttacttaacacaacttt 35456079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 22188855 - 22188755
Alignment:
Q  105 ctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtag 202  Q
    |||||| |||||||||| ||||| ||||  |||||||||||||||| ||| | ||| ||||||  | |||||||||||| ||| |||| |||||||||||    
T  22188855 ctagacttttttggatgacaaaaccaattctcgtaaacacaacattcatgaatctaggagacatgatattgttatgcatgaccttttgaactctatgtag 22188756  T
Q  203 a 203  Q
    |    
T  22188755 a 22188755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 37873841 - 37873738
Alignment:
Q  102 ccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatg 199  Q
    ||||||| ||||||| ||| |||||||||||| || ||||||||||||| ||  |||||  || ||  |||||||| ||||| |||||||| ||||||||    
T  37873841 ccgctaggccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctagaagtcatgacattgttctgcatgaccctttgaactctatg 37873742  T
Q  200 taga 203  Q
    ||||    
T  37873741 taga 37873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 8100619 - 8100666
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttga 244  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  8100619 atgtaaattgtcacaacacgttttctcatgtttgaccattttacttga 8100666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 11005763 - 11005825
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacaca 145  Q
    |||||| ||||||||| ||||||||  |||||||||||||||||| ||||| | |||||||||    
T  11005763 aagcgggcaacaagctgcgccgctaagcctttttggatggcaaaaccaatcctagtaaacaca 11005825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 15292259 - 15292165
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagaga 165  Q
    ||||||| ||| ||| || |||||| || |||||| |  | |||||||||||||||||||||| || ||||||||||||| ||| ||||| ||||    
T  15292259 tgaatagaaggcaagtgggcaacaaactgcgccgccaagcttttttggatggcaaaatcaatcctcataaacacaacattcatggacctaggaga 15292165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 27336759 - 27336816
Alignment:
Q  196 tatgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    ||||| |||||||| |||||| ||||||||||||||||| ||| |||||| |||||||    
T  27336759 tatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttt 27336816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 14423591 - 14423667
Alignment:
Q  102 ccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatg 178  Q
    |||||||| ||||||||||||||||| ||||| | || ||||||  ||||||| ||||||||||||  |||||||||||    
T  14423591 ccgctagatctttttggatggcaaaaccaatccttgtgaacaca--atttatggacctaagagacatgacattgttatg 14423667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 15506830 - 15506770
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||| | ||||| ||| ||||||| ||||| |||||||||| ||||||||||||||||    
T  15506830 caacaagttgcgccgttaggccttttttgatggtaaaatcaatcctcgtaaacacaacatt 15506770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 37873678 - 37873622
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| |||||| |||||||    
T  37873678 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 37873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 8100445 - 8100507
Alignment:
Q  89 acaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattta 152  Q
    |||||||||| |||| |||| | |||||||||||||||||||||| ||| ||| ||||||||||    
T  8100445 acaacaagctgcgccactaggcttttttggatggcaaaatcaatcatcgcaaa-acaacattta 8100507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 18176759 - 18176877
Alignment:
Q  43 aatattaactattaatattacttaca--catgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaa 140  Q
    |||||| ||||| |||||||||||||  ||||||||||||| |||||  ||| |   ||| ||| || ||||||||  ||| |||||| |||  ||||||    
T  18176759 aatatttactatcaatattacttacatacatgaataggagggaagcgagcaatactttacaccgttaaacctttttaaatgacaaaattaattatcgtaa 18176858  T
Q  141 acacaacatttatgtacct 159  Q
    |||||||||||||| ||||    
T  18176859 acacaacatttatgaacct 18176877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 34475953 - 34476003
Alignment:
Q  110 cctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    |||||||||| || |||| |||||||||||||||||||||| ||| |||||    
T  34475953 cctttttggacggaaaaaacaatcttcgtaaacacaacattcatggaccta 34476003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 12033346 - 12033383
Alignment:
Q  113 ttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  12033346 ttttggatggcaaaaccaatcatcgtaaacacaacatt 12033383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 23092694 - 23092763
Alignment:
Q  73 aataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaac 142  Q
    ||||| ||| |||| |||||||| || ||  |||||||||| ||||||| ||||||||||| ||||||||    
T  23092694 aatagaaggcaagcagacaacaaactgcgttgctagaccttgttggatgacaaaatcaatcctcgtaaac 23092763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 23424083 - 23424030
Alignment:
Q  93 caagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaa 146  Q
    |||||| | ||| ||||| |||||||||| |||||||||||||| |||||||||    
T  23424083 caagctgcaccgatagacatttttggatgacaaaatcaatcttcataaacacaa 23424030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 8858983 - 8859031
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||||||||||||||||||| | ||| ||||||    
T  8858983 atgttgattgtcagaacacgctttctcatgtttgactactttgcttgac 8859031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 43115497 - 43115461
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgacc 233  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43115497 atgttgattgtcaaaacacgctttctcatatttgacc 43115461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 43129601 - 43129649
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||| ||||||||||||||||| ||| ||||||    
T  43129601 atgttgattgtcagaacacgttttctcatgtttgaccactttgcttgac 43129649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 28224846 - 28225007
Alignment:
Q  44 atattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    ||||| ||||| ||||||||||||| |||||||||||  |||||| ||| ||||| ||||||||||||||||||||||||||||  ||||||| ||||||    
T  28224846 atatttactatcaatattacttacaaatgaataggagacaagcgggcaataagctgcgccgctagacctttttggatggcaaaacaaatcttcataaaca 28224945  T
Q  144 caacatttatgtacctaagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    ||||||| ||  ||||| |||||  || ||||| |||||||| |||||||||||||||||||    
T  28224946 caacattcattgacctaggagacataatattgtcatgcataatcctttggactctatgtaga 28225007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 17344499 - 17344645
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||| | ||||||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||||| ||| |||    
T  17344499 attatttacacttgaatagaaggcaagccggcaacaagctgcgccgatagacctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacc 17344598  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||||||||||| ||| |||| ||||||||||||    
T  17344599 taggagacatgacattgttatgcatgaccttttgaactctatgtaga 17344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 27494165 - 27494304
Alignment:
Q  52 tattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattt 151  Q
    ||||||||||||||||| |||||||||||| |||| | ||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||| |||     
T  27494165 tattaatattacttacatatgaataggaggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaaccaatattcgtaaacacaatattc 27494264  T
Q  152 atgtacctaagagac--aacattgttatgcataacccttt 189  Q
    ||  || || |||||  ||||||| ||| |||||||||||    
T  27494265 atagacttaggagacataacattgctatacataacccttt 27494304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 4413312 - 4413166
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| ||| || ||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| ||| |||    
T  4413312 attatttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacc 4413213  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  || ||| ||||||| ||| |||| || |||||||||    
T  4413212 taggagacatgactttgctatgcatgaccttttgaaccctatgtaga 4413166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 13413212 - 13413358
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||  ||||||||||||||||  |||| ||| |||||||||||||||||| ||||  || ||||||||||||| ||| |||    
T  13413212 attatttacacttgaatagaagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaattctcataaacacaacattcatggacc 13413311  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||||||||||| ||| |||| ||||||||||||    
T  13413312 taggagacatgacattgttatgcatgaccttttgaactctatgtaga 13413358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 9685637 - 9685515
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgca 180  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||| ||| ||||| ||||||  |||||| ||| ||    
T  9685637 aagcgggcaacaagctgcgccgctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctaggagacatgacattgctatcca 9685538  T
Q  181 taaccctttggactctatgtaga 203  Q
    | ||| |||| ||||||| ||||    
T  9685537 tgaccttttgaactctatataga 9685515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 41868153 - 41868008
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| | | |||||| ||||||| | |||||||||| |||||||| |||||||| ||||| |||||||||||||||| ||| |||    
T  41868153 attatttacacttgaatagaaagcaagcgggcaacaagttgcgccgctagatctttttgg-tggcaaaaccaatcctcgtaaacacaacattcatggacc 41868055  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |  ||||||  |||||||||||||| ||| |||| ||||||||||||    
T  41868054 tgggagacatgacattgttatgcatgaccttttgaactctatgtaga 41868008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 27502269 - 27502369
Alignment:
Q  105 ctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtag 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||  | ||| ||||||  | |||| |||||||||||||||||| |||||||||    
T  27502269 ctagacctttttggattgcaaaatcaatcttcgtaaacacaacattcatagatctaggagacatgatattgctatgcataaccctttggattctatgtag 27502368  T
Q  203 a 203  Q
    |    
T  27502369 a 27502369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 3208490 - 3208406
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaaca 143  Q
    |||| |||||| ||||||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||    
T  3208490 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatcctcgtaaaca 3208406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 2626093 - 2626002
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||| ||||||||| | ||| |  |||| |||||||||||||||||||||    
T  2626093 attaattacacatgaatagaaggcaagcggacaacaagctgcgccgttagacctttgtagatagttaaattaatcttcgtaaacacaacatt 2626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 16352037 - 16351944
Alignment:
Q  112 tttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    ||||| |||||||||| ||||| ||||||||| || ||| ||||||||||||||||  |||||||| ||||| ||| |||| ||||||||||||    
T  16352037 tttttagatggcaaaaacaatcatcgtaaacataatattcatgtacctaagagacatgacattgttgtgcatgaccatttgaactctatgtaga 16351944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 41702133 - 41702207
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatc 133  Q
    ||||||||||||||||||| ||| ||| || ||||||||| |||| |||| |||||||||||||||||| |||||    
T  41702133 attacttacacatgaatagaaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaatc 41702207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 10587201 - 10587144
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagaccttttt 116  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||    
T  10587201 attacttacacatgaatagaaggcaaacgggcaacaagctacgccgctagaccttttt 10587144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 42122678 - 42122763
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacac 144  Q
    |||| |||||| ||||||| ||| ||||| |||| ||||| ||||||||||| |||||||||||||||| || || ||||||||||    
T  42122678 attatttacacttgaatagaaggcaagcgaacaataagctgcgccgctagacttttttggatggcaaaaccagtcctcgtaaacac 42122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 30602350 - 30602430
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgta 139  Q
    |||| |||||||||||||| ||| | |||| ||||||||| ||| ||||| |||||||||||||||||| ||||| |||||    
T  30602350 attaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 18745200 - 18745109
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||| |||||| ||||||| ||  |||||  ||| ||||| |||||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  18745200 attatttacacttgaatagaagacaagcgagcaataagctgcgccgctagacctttttggatggcaaaaccaatccttataaacacaacatt 18745109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 38724054 - 38723985
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacct 112  Q
    |||||| ||||| |||||||||||||||| ||||||||| |||||  ||||||||| | |||||||||||    
T  38724054 aatatttactatcaatattacttacacataaataggaggcaagcgagcaacaagctgcaccgctagacct 38723985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 15515362 - 15515302
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||| || ||||||||||| |||||||||||||||| ||||| |||| |||||||||||    
T  15515362 caacaaactgcgccgctagacttttttggatggcaaaaccaatcctcgtgaacacaacatt 15515302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 44686348 - 44686423
Alignment:
Q  130 aatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    |||| |||||||||||||||| | | ||||| ||||||  |||||| |||||||||||||||||| ||||||||||    
T  44686348 aatcctcgtaaacacaacattcacggacctaggagacataacattgctatgcataaccctttggaatctatgtaga 44686423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 11921436 - 11921349
Alignment:
Q  73 aataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    ||||||||| ||||||  |||||||| || ||||||| ||||||||||||| |||  |||| | |||||||||||||| ||| |||||    
T  11921436 aataggagggaagcgggtaacaagctgcgacgctagatctttttggatggcgaaactaatcctagtaaacacaacattcatggaccta 11921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 19162005 - 19161885
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgca 180  Q
    ||||||||| |||||| |||| |||   ||||||||||| ||||||||||| ||| |||||||  ||| ||  ||||| ||||||  |||||| ||||||    
T  19162005 aagcggacagcaagctgcgccactacgtctttttggatgacaaaatcaatcctcgaaaacacactattcattgacctaggagacatgacattgatatgca 19161906  T
Q  181 taaccctttggactctatgta 201  Q
    | ||| |||| ||||||||||    
T  19161905 tgaccttttgaactctatgta 19161885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 4413106 - 4413050
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||    
T  4413106 atgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagcttt 4413050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 20143179 - 20143123
Alignment:
Q  71 tgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaa 127  Q
    ||||||| ||| || | ||||||||| | ||||||||||||||||||||||||||||    
T  20143179 tgaatagaaggcaaacagacaacaagttgcgccgctagacctttttggatggcaaaa 20143123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 3825639 - 3825682
Alignment:
Q  111 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatg 154  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||    
T  3825639 ctttttggatgacaaaatcgatcttcataaacacaacatttatg 3825682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 13147132 - 13147089
Alignment:
Q  202 gattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||    
T  13147132 gattgtcagaacacgctttctcatgtttgaccacttttcttgac 13147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 32029308 - 32029186
Alignment:
Q  83 aagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgca 180  Q
    |||| ||||| || |||||||||||  |||||||| ||| || ||| ||||||||||||||| | ||| |||  ||||  |||||  ||||||||||| |    
T  32029308 aagcagacaataaactacgccgctatgcctttttgaatgacagaattaatcttcgtaaacacgatattcatgatcctataagacatgacattgttatgga 32029209  T
Q  181 taaccctttggactctatgtaga 203  Q
    | || ||||| ||||||||||||    
T  32029208 tgactctttgaactctatgtaga 32029186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 7761050 - 7760945
Alignment:
Q  100 cgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccctttggactcta 197  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||| ||||  || || || ||||||  |||||| || |||| | |||||| ||||||    
T  7761050 cgccgctaagcctttttggatgtcaaaatcaattttcgtaagcacatcattcttgaacttatgagacatcacattgctacgcatgatcctttgaactcta 7760951  T
Q  198 tgtaga 203  Q
    ||||||    
T  7760950 tgtaga 7760945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 23485159 - 23485038
Alignment:
Q  83 aagcggacaacaagctacgccgctagaccttttt-ggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagac--aacattgttatgc 179  Q
    |||| ||||||||||| |||||  | |||||||| || |||||||| |||| || ||||||||||| || ||| ||||| |||||  | |||||||||||    
T  23485159 aagccgacaacaagctgcgccgtcaaaccttttttggttggcaaaaccaatttttgtaaacacaacgttcatggacctaggagacatagcattgttatgc 23485060  T
Q  180 ataaccctttggactctatgta 201  Q
    || | | |||| ||||||||||    
T  23485059 atgatcttttgaactctatgta 23485038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 16351882 - 16351825
Alignment:
Q  196 tatgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    ||||| |||||| | |||||  ||||||||||||||||| ||| ||||||||||||||    
T  16351882 tatgttgattgtgagaacacattttctcatgtttgaccactttgcttgacacaacttt 16351825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 19514202 - 19514239
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacg 101  Q
    |||||||||||||| | |||||||||||||||||||||    
T  19514202 ttacacatgaatagaaagtaagcggacaacaagctacg 19514239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 26407896 - 26407839
Alignment:
Q  103 cgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtaccta 160  Q
    ||||| || |||| |||| |||||||||||| |||||||||||||||| ||| |||||    
T  26407896 cgctaaacattttaggatagcaaaatcaatcatcgtaaacacaacattcatgaaccta 26407839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 5532486 - 5532534
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||||| ||||||||||||||||| ||| ||||||    
T  5532486 atgttgattgtcacaacacgttttctcatgtttgaccactttgcttgac 5532534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 34250249 - 34250153
Alignment:
Q  43 aatattaactattaatattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgta 139  Q
    |||||| | ||| ||||||||||||||||||||| |||| || | ||||||||  | |||   |||| ||||||||||| |||||| |||| |||||    
T  34250249 aatatttaatatcaatattacttacacatgaatatgaggcaaaccgacaacaaattgcgctattagatctttttggatgacaaaattaatcctcgta 34250153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 41867948 - 41867900
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgac 245  Q
    |||| |||||||| |||| ||||||||||||||||||| ||| ||||||    
T  41867948 atgttgattgtcagaacatgctttctcatgtttgaccactttgcttgac 41867900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 102967 - 103113
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||    
T  102967 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacc 103066  T
Q  159 taagagaca--acattgttatgcataaccctttggactctatgtaga 203  Q
    || ||||||  |||||||||||||| ||| ||||  ||| |||||||    
T  103067 taggagacacgacattgttatgcatgaccttttgagctcgatgtaga 103113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 5185 - 5277
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattt 151  Q
    |||| |||||| ||||||| | | |||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  5185 attatttacacttgaatagaatgcaagcgggcaacaagctgcgccgctagacctttttggatggcaaagtcaatcctcgtgaacacaacattt 5277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 6754 - 6844
Alignment:
Q  64 ttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatg 154  Q
    |||||| ||||||| ||| |||||| ||||||||| || ||||||||||||||||||||||||| ||||  ||||||||||||| ||||||    
T  6754 ttacacttgaatagaaggcaagcgggcaacaagctgcggcgctagacctttttggatggcaaaaccaattctcgtaaacacaacttttatg 6844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 33111 - 33257
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacc 158  Q
    |||| |||||| ||||||| ||| |||| | ||||||||| | |||| |  |||||||||||| ||||||||||| |||||||||| || || ||| |||    
T  33111 attatttacacttgaatagaaggcaagcaggcaacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacc 33210  T
Q  159 taagagac--aacattgttatgcataaccctttggactctatgtaga 203  Q
    || |||||  || |||| ||||||| ||| |||| ||||||||||||    
T  33211 taggagacataaaattgctatgcatgaccttttgaactctatgtaga 33257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 49307 - 49419
Alignment:
Q  90 caacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca--acattgttatgcataaccct 187  Q
    ||||||| | |||||||||||| |||| ||||| |||||||||  ||||||| || ||||| ||| || |||||||||  |||||||||||||| | |||    
T  49307 caacaagttgcgccgctagaccgttttagatggaaaaatcaattctcgtaaatactacattcatggacataagagacatgacattgttatgcatgatcct 49406  T
Q  188 ttggactctatgt 200  Q
    ||| |||||||||    
T  49407 ttgaactctatgt 49419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 17468 - 17392
Alignment:
Q  114 tttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagacaacattgttatgcataaccctttg 190  Q
    ||||||| |||||| ||||| || ||||||||||||| ||| ||||||||||||||||| |||||||| ||| ||||    
T  17468 tttggatagcaaaagcaatcatcttaaacacaacattcatggacctaagagacaacattattatgcatgaccatttg 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6401 - 6457
Alignment:
Q  197 atgtagattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||| |||||||| |||||||||||||||||||| ||| |||||||||| |||||||    
T  6401 atgttgattgtcagaacacgctttctcatgtttggccactttacttgacgcaacttt 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 47766 - 47675
Alignment:
Q  59 attacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    ||||||||||| ||||||| ||  || ||||||||||| |  ||||||| || ||||| ||||| |||||||||||| ||||||| ||||||    
T  47766 attacttacacgtgaatagaagacaaacggacaacaagttgtgccgctaaacatttttcgatggtaaaatcaatctttgtaaacataacatt 47675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 47571 - 47523
Alignment:
Q  205 tgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    ||||| |||||  ||||||||||||| |||||||||||||| |||||||    
T  47571 tgtcagaacacattttctcatgtttggccattttacttgacgcaacttt 47523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 16857 - 16809
Alignment:
Q  102 ccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatt 150  Q
    |||||||||||||||||||||||||||||||  |||| || ||||||||    
T  16857 ccgctagacctttttggatggcaaaatcaattctcgtgaatacaacatt 16809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 10436 - 10487
Alignment:
Q  202 gattgtcaaaacacgctttctcatgtttgaccattttacttgacacaacttt 253  Q
    |||||||| ||||||| || ||||||||| |||||||||||||| |||||||    
T  10436 gattgtcagaacacgcattatcatgtttggccattttacttgacgcaacttt 10487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 4451 - 4385
Alignment:
Q  101 gccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||| |||| | |||| ||||| |||| ||||||||||||||||||||| || || ||||||    
T  4451 gccgctagatctttcttgatgacaaaaccaatattcgtaaacacaacatttatggacttatgagaca 4385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 431 - 342
Alignment:
Q  58 tattacttacacatgaataggaggtaagcggacaacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaac 147  Q
    ||||| |||||| ||||||| ||| |||| | ||||||| | |||| | |  ||||||||||||||||||  |||| |||||||||||||    
T  431 tattatttacacttgaatagaaggaaagccggcaacaagatgcgccacaaagcctttttggatggcaaaactaatcctcgtaaacacaac 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 7496 - 7572
Alignment:
Q  91 aacaagctacgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacatttatgtacctaagagaca 167  Q
    ||||||||  |||| |||| ||||||||||| ||||| ||||  ||||||||| |||||| ||| ||||| ||||||    
T  7496 aacaagctgtgccgttagatctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagaca 7572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University