View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_36 (Length: 250)
Name: NF19198_high_36
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_36 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 16803189 - 16803422
Alignment:
| Q |
1 |
gcacgctctaacttaaccatagatgtcactatagattctaacgtagaataaacattctctggcaaaatagttaatgttgttcccgaatcaataattgtat |
100 |
Q |
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| T |
16803189 |
gcacgctctaacttaaccatagatgtcactatagattctaacctagaataaacattctctggcaaaatagttaatgttgttcccgaatcaataattgtat |
16803288 |
T |
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| Q |
101 |
ttcctagattatcattttctgaggtggagttttcaaattttataatgtggtctcccacactcaatgcattcaaagttgtggagtaaccgatttcacctgc |
200 |
Q |
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| T |
16803289 |
ttcctagattatcattttttgaggtggagttttcaaattttataatgtggtctcccacactcaatgcattcaaagttgtggagtaaccgatttcacctgc |
16803388 |
T |
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| Q |
201 |
tgttatgggagttgagacagtcccaacaccagaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16803389 |
tgttatgggagttgagacagtcccaacaccagaa |
16803422 |
T |
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Target: scaffold0024 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 14875 - 14978
Alignment:
| Q |
2 |
cacgctctaacttaaccatagatgtcactatagattctaacgtagaataaacattctctggcaaaatagttaatgttgttcccgaatcaataattgtatt |
101 |
Q |
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|||||| |||||||| |||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||| |
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| T |
14875 |
cacgctttaacttaatcatagatgccactgtagattctaactgagaataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatt |
14974 |
T |
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| Q |
102 |
tcct |
105 |
Q |
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|||| |
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| T |
14975 |
tcct |
14978 |
T |
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