View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_38 (Length: 246)
Name: NF19198_high_38
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42060557 - 42060789
Alignment:
| Q |
1 |
atagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaacaggatgtacaaattgcaaaatagtttcaataaaccactg |
100 |
Q |
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| T |
42060557 |
atagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaacaggatgtacaaattgcaaaatagtttgaataaaccactg |
42060656 |
T |
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| Q |
101 |
ttagattctttgtatccaatgaaatttgcaaccatttgttctcctacagtaagcaatttgtttgaaacgattcacaatagccacaagcataatggttgga |
200 |
Q |
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| T |
42060657 |
ttagattctttgtatccaatgaaatttgaaaccatttgttctcctacagtaagcaatttatttgaaacgattcacaatagccacaagcataatggttgga |
42060756 |
T |
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| Q |
201 |
agttgaacattttcaatagaacagtgctatatg |
233 |
Q |
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| T |
42060757 |
agttgaacattttcaatagaacagtgctatatg |
42060789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42084412 - 42084472
Alignment:
| Q |
1 |
atagtttctactttttaatttctatctgtgccaattgtatagatacggtagaaagttgaac |
61 |
Q |
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|||||||||||||| ||||||| |||| || |||||| ||| |||| |||||||||||||| |
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| T |
42084412 |
atagtttctactttgtaatttcaatctttgtcaattgcataaatacagtagaaagttgaac |
42084472 |
T |
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