View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_47 (Length: 228)
Name: NF19198_high_47
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 3239265 - 3239073
Alignment:
| Q |
19 |
aggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcatataatgatgagaaatggatccaaaatcaatggcttctggatttgaagg |
118 |
Q |
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| T |
3239265 |
aggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcata--atgatgagaaatggatccaaaatcaatggcttctggatttgaagg |
3239168 |
T |
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| Q |
119 |
aataaccatcttcctcatttcaatgtttttatagctccttcaacatcttaattctcttcaaaggtactcctattgttttatttattttttctctg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3239167 |
aataaccatcttcctcatttcaatgtttttatagctccttcaacgtcttaattctcttcaaaggtactcctattgttttatttattttatctctg |
3239073 |
T |
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