View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_48 (Length: 227)
Name: NF19198_high_48
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 38180561 - 38180758
Alignment:
| Q |
13 |
gaagcaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttg |
112 |
Q |
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| T |
38180561 |
gaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttg |
38180660 |
T |
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| Q |
113 |
gcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgc |
210 |
Q |
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| T |
38180661 |
gcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgc |
38180758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 38185237 - 38185427
Alignment:
| Q |
20 |
aggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaatt |
119 |
Q |
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| T |
38185237 |
aggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaatt |
38185336 |
T |
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| Q |
120 |
ggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgc |
210 |
Q |
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| T |
38185337 |
ggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgc |
38185427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 38170754 - 38170944
Alignment:
| Q |
20 |
aggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaatt |
119 |
Q |
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| T |
38170754 |
aggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaatt |
38170853 |
T |
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| Q |
120 |
ggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgc |
210 |
Q |
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| T |
38170854 |
ggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgc |
38170944 |
T |
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